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Sample GSM1170087 Query DataSets for GSM1170087
Status Public on Jun 21, 2013
Title Peripheral blood RNA from InChianti sample 48
Sample type RNA
 
Source name Human peripheral blood
Organism Homo sapiens
Characteristics tissue: peripheral blood leucocyte
Extracted molecule total RNA
Extraction protocol RNA was extracted from peripheral blood samples using the PAXgene Blood mRNA kit (Qiagen, Crawley, UK) according to the manufacturer's instructions.
Label biotin
Label protocol RNA was biotinylated and amplified using the Illumina® TotalPrep(tm) -96 RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using eQTL Mapping Pipeline software
 
Submission date Jun 20, 2013
Last update date Jun 21, 2013
Contact name Hanieh Yaghootkar
E-mail(s) [email protected]
Organization name University of Exeter Medical School
Department Genetics
Lab Genetics of Complex Traits
Street address Magdalen Road
City Exeter
ZIP/Postal code EX1 2LU
Country United Kingdom
 
Platform ID GPL6947
Series (1)
GSE48152 Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association.

Data table header descriptions
ID_REF
VALUE Quantile Normalization (QN), Log2 Transformation (L2T), Probe Centering by the Mean (Standardization of probes), Sample Z-Transformation (Standardization of samples)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1910180 0.115467720794926 0.383905
ILMN_1725881 0.828898736426651 0.01319261
ILMN_1804174 0.183014855357848 0.06332454
ILMN_1796063 1.1192761817647 0
ILMN_1811966 0.51094595882685 0.1094987
ILMN_1668162 -0.372448947212233 0.6609499
ILMN_1715600 -0.222703598831564 0.7638522
ILMN_1912287 0.725608206389176 0.01187335
ILMN_1889125 0.139223772763244 0.2638522
ILMN_1793729 -2.57796606284425 0
ILMN_2296644 -0.349556432649964 0.7519789
ILMN_1711283 0.190147202262777 0.3311346
ILMN_1682799 0.40435830072332 0
ILMN_1909767 0.409591662769476 0.3034301
ILMN_1840770 0.347284190594356 0.5145119
ILMN_1906209 -0.433772363851857 0.7664908
ILMN_1665311 0.0575936651140485 0.1187335
ILMN_1657235 -0.272532483470849 0.8773087
ILMN_1655444 0.541188364699346 0
ILMN_1656744 0.181037861921138 0.4762533

Total number of rows: 48803

Table truncated, full table size 1916 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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