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Sample GSM1170102 Query DataSets for GSM1170102
Status Public on Jun 21, 2013
Title Peripheral blood RNA from InChianti sample 63
Sample type RNA
 
Source name Human peripheral blood
Organism Homo sapiens
Characteristics tissue: peripheral blood leucocyte
Extracted molecule total RNA
Extraction protocol RNA was extracted from peripheral blood samples using the PAXgene Blood mRNA kit (Qiagen, Crawley, UK) according to the manufacturer's instructions.
Label biotin
Label protocol RNA was biotinylated and amplified using the Illumina® TotalPrep(tm) -96 RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using eQTL Mapping Pipeline software
 
Submission date Jun 20, 2013
Last update date Jun 21, 2013
Contact name Hanieh Yaghootkar
E-mail(s) [email protected]
Organization name University of Exeter Medical School
Department Genetics
Lab Genetics of Complex Traits
Street address Magdalen Road
City Exeter
ZIP/Postal code EX1 2LU
Country United Kingdom
 
Platform ID GPL6947
Series (1)
GSE48152 Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association.

Data table header descriptions
ID_REF
VALUE Quantile Normalization (QN), Log2 Transformation (L2T), Probe Centering by the Mean (Standardization of probes), Sample Z-Transformation (Standardization of samples)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1910180 -0.223667174340589 0.6129459
ILMN_1725881 0.196994464207786 0.2496697
ILMN_1804174 -0.741970107764704 0.4834875
ILMN_1796063 -0.0517753216474376 0
ILMN_1811966 -0.190609684370379 0.5350066
ILMN_1668162 1.14581174393373 0.0330251
ILMN_1715600 0.672352795316814 0.2866579
ILMN_1912287 -0.464716051707215 0.5350066
ILMN_1889125 0.242455067128741 0.2602378
ILMN_1793729 0.83264891488294 0
ILMN_2296644 -0.279520206624214 0.6988111
ILMN_1711283 -0.395772892508035 0.7093791
ILMN_1682799 -0.164078890666555 0
ILMN_1909767 -0.72389732033378 0.9062087
ILMN_1840770 -0.0841648979251215 0.8137385
ILMN_1906209 0.730434902349464 0.1519155
ILMN_1665311 0.106448729684086 0.1334214
ILMN_1657235 0.173999577447283 0.7014531
ILMN_1655444 0.201940068989863 0
ILMN_1656744 -0.726656261942343 0.9101717

Total number of rows: 48803

Table truncated, full table size 1910 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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