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Sample GSM1170172 Query DataSets for GSM1170172
Status Public on Jun 21, 2013
Title Peripheral blood RNA from InChianti sample 133
Sample type RNA
 
Source name Human peripheral blood
Organism Homo sapiens
Characteristics tissue: peripheral blood leucocyte
Extracted molecule total RNA
Extraction protocol RNA was extracted from peripheral blood samples using the PAXgene Blood mRNA kit (Qiagen, Crawley, UK) according to the manufacturer's instructions.
Label biotin
Label protocol RNA was biotinylated and amplified using the Illumina® TotalPrep(tm) -96 RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using eQTL Mapping Pipeline software
 
Submission date Jun 20, 2013
Last update date Jun 21, 2013
Contact name Hanieh Yaghootkar
E-mail(s) [email protected]
Organization name University of Exeter Medical School
Department Genetics
Lab Genetics of Complex Traits
Street address Magdalen Road
City Exeter
ZIP/Postal code EX1 2LU
Country United Kingdom
 
Platform ID GPL6947
Series (1)
GSE48152 Allelic heterogeneity and more detailed analyses of known loci explain additional phenotypic variation and reveal complex patterns of association.

Data table header descriptions
ID_REF
VALUE Quantile Normalization (QN), Log2 Transformation (L2T), Probe Centering by the Mean (Standardization of probes), Sample Z-Transformation (Standardization of samples)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1910180 0.721744696655121 0.1044974
ILMN_1725881 0.6079624833532 0.07936508
ILMN_1804174 0.0775663250559302 0.08730159
ILMN_1796063 3.53369268876496 0
ILMN_1811966 0.168712706374225 0.2804233
ILMN_1668162 -0.566386320803518 0.6825397
ILMN_1715600 0.18234666658575 0.5013227
ILMN_1912287 -0.124282975254972 0.2883598
ILMN_1889125 -0.25406866162932 0.473545
ILMN_1793729 -2.21134269254966 0
ILMN_2296644 0.119978926799586 0.4179894
ILMN_1711283 0.0666908540555562 0.4007936
ILMN_1682799 -0.0152160178352582 0
ILMN_1909767 -0.280440630522909 0.734127
ILMN_1840770 -0.524705151174217 0.9166667
ILMN_1906209 -0.0709172017263474 0.4960317
ILMN_1665311 0.53700600267555 0.01322751
ILMN_1657235 -0.860767503324863 0.9708995
ILMN_1655444 0.296505674363852 0
ILMN_1656744 0.475481370056523 0.3187831

Total number of rows: 48803

Table truncated, full table size 1888 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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