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Sample GSM1178975 Query DataSets for GSM1178975
Status Public on Aug 08, 2013
Title liver, N, A1359-06
Sample type RNA
 
Source name Nash
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Nash
fat: 80
inflammation: 1
other_id: NA
bariatric surgery: NA
Sex: male
age: 49.00555556
bmi: 25.61728395
nas: 4
fibrosis: 1
lar: 0.159091628
delta lar: NA
delta leptin: NA
leptin: 0.901124
adiponectin: 5.664182401
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 3.159067797
7892502 3.30944638
7892503 3.009281252
7892504 7.90956257
7892505 2.477483076
7892506 3.551239898
7892507 4.314066927
7892508 4.284937088
7892509 8.828594027
7892510 3.374388943
7892511 3.555422284
7892512 3.991560651
7892513 2.81134308
7892514 9.863055013
7892515 8.083679389
7892516 3.406324407
7892517 5.472629064
7892518 1.877498874
7892519 2.991169336
7892520 7.489389287

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178975_A1359-06.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table
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