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Sample GSM1178981 Query DataSets for GSM1178981
Status Public on Aug 08, 2013
Title liver, H, A1359-12
Sample type RNA
 
Source name Healthy obese
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Healthy obese
fat: 3
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: female
age: 39
bmi: 55.6
nas: 0
fibrosis: 0
lar: 6.4527473
delta lar: NA
delta leptin: NA
leptin: 55.784
adiponectin: 8.645
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 2.82875202
7892502 3.404221653
7892503 2.219490881
7892504 7.009512164
7892505 2.508596071
7892506 2.870791587
7892507 3.732594739
7892508 4.972431344
7892509 9.120692659
7892510 3.319044589
7892511 3.194665499
7892512 3.973289556
7892513 2.211860462
7892514 10.01609157
7892515 7.646298513
7892516 3.314481703
7892517 5.772210887
7892518 2.010171006
7892519 2.747675378
7892520 7.37785112

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178981_A1359-12.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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