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Sample GSM1178992 Query DataSets for GSM1178992
Status Public on Aug 08, 2013
Title liver, H, A1359-24
Sample type RNA
 
Source name Healthy obese
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Healthy obese
fat: 2
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: female
age: 60
bmi: 43.4
nas: 0
fibrosis: 0
lar: 2.4090676
delta lar: NA
delta leptin: NA
leptin: 28.215
adiponectin: 11.712
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 3.185260523
7892502 3.643917442
7892503 2.69279095
7892504 6.104171646
7892505 3.062437724
7892506 4.509450583
7892507 4.127070594
7892508 5.868910895
7892509 8.099742425
7892510 4.263514095
7892511 3.295817988
7892512 4.49697888
7892513 2.949830252
7892514 9.686680105
7892515 6.983898255
7892516 2.168789266
7892517 4.389250473
7892518 3.259598771
7892519 2.601305729
7892520 6.978457041

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178992_A1359-24.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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