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Sample GSM1178995 Query DataSets for GSM1178995
Status Public on Aug 08, 2013
Title liver, N, A1359-26
Sample type RNA
 
Source name Nash
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Nash
fat: 90
inflammation: 1
other_id: NA
bariatric surgery: NA
Sex: female
age: 32
bmi: 47.3
nas: 5
fibrosis: 0
lar: 12.478815
delta lar: NA
delta leptin: NA
leptin: 36.226
adiponectin: 2.903
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 2.182797575
7892502 3.493521909
7892503 2.445012598
7892504 6.849694058
7892505 1.677924776
7892506 4.709084329
7892507 3.077289139
7892508 4.206681462
7892509 9.180030335
7892510 4.760983295
7892511 2.911829853
7892512 3.690364918
7892513 1.82385245
7892514 10.33963951
7892515 7.294227363
7892516 3.731651474
7892517 5.491172428
7892518 1.928615294
7892519 2.748917417
7892520 7.357184785

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1178995_A1359-26.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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