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Sample GSM1179007 Query DataSets for GSM1179007
Status Public on Aug 08, 2013
Title liver, H, A1359-38
Sample type RNA
 
Source name Healthy obese
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Healthy obese
fat: 0
inflammation: 0
other_id: NA
bariatric surgery: NA
Sex: female
age: 33
bmi: 54.1
nas: 0
fibrosis: 0
lar: 7.1819868
delta lar: NA
delta leptin: NA
leptin: 54.224
adiponectin: 7.55
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 2.108792216
7892502 2.992625399
7892503 2.806050307
7892504 7.363575726
7892505 2.535303729
7892506 4.675277841
7892507 3.908260303
7892508 4.631035998
7892509 8.944391685
7892510 3.632644904
7892511 3.260010968
7892512 4.551807157
7892513 3.408422022
7892514 9.90721173
7892515 7.496287629
7892516 3.853772581
7892517 4.675849071
7892518 1.732362469
7892519 2.298202305
7892520 7.445741367

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1179007_A1359-38.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table
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