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Sample GSM1179009 Query DataSets for GSM1179009
Status Public on Aug 08, 2013
Title liver, C, A1649-02
Sample type RNA
 
Source name Control, after surgery
Organism Homo sapiens
Characteristics tissue type: liver biopsy
group: Control
fat: 3
inflammation: 0
other_id: A1649-01.CEL
bariatric surgery: after surgery
Sex: female
age: 37.60277778
bmi: 29.99094613
nas: 0
fibrosis: 1
lar: 0.799909458
delta lar: NA
delta leptin: NA
leptin: 3.424103
adiponectin: 4.280613221
delta adipo: NA
Treatment protocol not applicable
Growth protocol liver biopsy
Extracted molecule total RNA
Extraction protocol For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label biotin
Label protocol according to the manufacturers protocols
 
Hybridization protocol according to the manufacturers protocols
Scan protocol according to the manufacturers protocols
Data processing RMA normalization with Bioconductor package oligo
 
Submission date Jul 01, 2013
Last update date Aug 08, 2013
Contact name Timo Itzel
E-mail(s) [email protected]
Organization name Universitätsklinikum Regensburg
Street address Franz-Josef-Strauß-Allee 11
City Regensburg
ZIP/Postal code 93042
Country Germany
 
Platform ID GPL11532
Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH

Data table header descriptions
ID_REF
VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo

Data table
ID_REF VALUE
7892501 2.659679175
7892502 3.901826502
7892503 2.812899511
7892504 7.014426589
7892505 2.190888413
7892506 4.974349512
7892507 4.982674789
7892508 5.090203755
7892509 8.428564824
7892510 4.268741901
7892511 2.756360058
7892512 5.175862488
7892513 3.531626541
7892514 10.56029367
7892515 7.941432234
7892516 3.859569267
7892517 5.716773832
7892518 2.136168093
7892519 3.076732121
7892520 7.441318585

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1179009_A1649-02.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table
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