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Status
Public on Aug 08, 2013
Title
liver, S, A1359-53
Sample type
RNA
Source name
Steatosis, after surgery
Organism
Homo sapiens Characteristics
tissue type: liver biopsy
Treatment protocol
not applicable
Growth protocol
liver biopsy
Extracted molecule
total RNA
Extraction protocol
For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.
Label
biotin
Label protocol
according to the manufacturers protocols
Hybridization protocol
according to the manufacturers protocols
Scan protocol
according to the manufacturers protocols
Data processing
RMA normalization with Bioconductor package oligo
Submission date
Jul 01, 2013
Last update date
Aug 08, 2013
Contact name
Timo Itzel
E-mail(s)
[email protected] Organization name
Universitätsklinikum Regensburg
Street address
Franz-Josef-Strauß-Allee 11
City
Regensburg
ZIP/Postal code
93042
Country
Germany
Platform ID
GPL11532 Series (1)
GSE48452 Human liver biopsy of different phases from control to NASH
Data table header descriptions ID_REF VALUE Log2 RMA normalized gene level expression values from Bioconductor package oligo
Data table ID_REF VALUE 7892501
4.533846713
7892502
4.120142546
7892503
3.197464801
7892504
7.510541142
7892505
2.159654725
7892506
4.441982846
7892507
4.645069203
7892508
5.554601127
7892509
8.947932099
7892510
3.022782901
7892511
3.456766139
7892512
3.855425849
7892513
4.343480336
7892514
9.783508422
7892515
7.197291025
7892516
2.181710341
7892517
5.028717285
7892518
2.295123305
7892519
2.188452266
7892520
7.4856606
33297 646 Kbytes .Supplementary file Size Download File type/resource GSM1179023_A1359-53.CEL.gz
4.4 Mb
(ftp) (http) CEL
Processed data included within Sample table
