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Sample GSM1184161 Query DataSets for GSM1184161
Status Public on Jul 10, 2013
Title Heart_BXD44 ISO
Sample type RNA
 
Source name Left Ventricle, 10 wks
Organism Mus musculus
Characteristics gender: female
strain: BXD44/RwwJ
agent: Isoproterenol
tissue: Left Ventricle
Treatment protocol Starting at 8-9 weeks, mice were treated for 3 weeks with 30 ug/g body weight/ day of Isoproterenol or were untreated controls for the same period of time
Extracted molecule total RNA
Extraction protocol total RNA was extracted using the Quiagen miRNAeasy 96-well kits using standard protocol. RNA integrity was determined using an Agilent Bioanalyzer
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 7754323034_D
Data processing GenomeStudio V2010.3 (Gene Expression 1.8.0 module).
Ddata was analyzed using the limma R package.
 
Submission date Jul 10, 2013
Last update date Jul 10, 2013
Contact name Christoph Daniel Rau
E-mail(s) [email protected]
Organization name UCLA
Street address 675 Charles E Young Drive S
City Los Angeles
State/province United States
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE48760 Transcriptomes of the hybrid mouse diversity panel subjected to Isoproterenol challenge

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pvalue

Data table
ID_REF VALUE Detection Pvalue
ILMN_1248788 5.299212774 0.02882206
ILMN_2707227 6.06068692 0
ILMN_2896528 12.21291229 0
ILMN_2721178 10.04897572 0
ILMN_1227723 8.959069907 0
ILMN_3033922 10.24262303 0
ILMN_3092673 12.21530577 0
ILMN_2730714 12.74814549 0
ILMN_3162224 11.11782041 0
ILMN_2816356 5.849989051 0.003759399
ILMN_2808939 7.193860826 0
ILMN_2634564 7.526290867 0
ILMN_1216623 7.916085945 0
ILMN_1215157 8.420586776 0
ILMN_1228777 4.397104625 0.9135338
ILMN_2737647 4.826631056 0.1466165
ILMN_1216425 4.502235864 0.5776942
ILMN_2734484 9.246656903 0
ILMN_2652961 4.462517322 0.7030075
ILMN_2952292 4.741512613 0.1829574

Total number of rows: 25697

Table truncated, full table size 805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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