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Sample GSM119925 Query DataSets for GSM119925
Status Public on Jul 13, 2006
Title 13257618_C.G.hepatop_4B_10012005
Sample type RNA
 
Source name MGMA_154
Organism Magallana gigas
Characteristics adult, hepatopancreas, aquacultured
Extracted molecule total RNA
Label CY3
 
Hybridization protocol 50% formamide. 2.4% SDS, 4X SSPE, 2.5X Denhardts
Description None
Data processing Ch1 Intensities read directly from the Microarray scanner.
 
Submission date Jul 12, 2006
Last update date Jul 12, 2006
Contact name MarineGenomics Project
E-mail(s) [email protected]
Phone 843-762-8869
Fax 843-762-8847
URL http://www.marinegenomics.org
Organization name MarineGenomics.org
Lab HML
Street address 331 Fort Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Platform ID GPL3994
Series (1)
GSE5293 Crassostrea array characterization

Data table header descriptions
ID_REF Incremental generic ID Number
VALUE Ch1 Intensity raw intensity values
ch1 Background ch1 Background
ch1 Intensity Std Dev ch1 Intensity Std Dev
ch1 Background Std Dev ch1 Background Std Dev
ch1 Diameter ch1 Diameter of spot
ch1 Area ch1 Area of spot
ch1 Footprint ch1 Footprint of spot
ch1 Circularity ch1 Circularity of spot
ch1 Spot Uniformity ch1 Spot Uniformity
ch1 Bkg. Uniformity ch1 Bkg. Uniformity
ch1 Signal Noise Ratio ch1 Signal Noise Ratio
ch1 Confidence ch1 Confidence
Ignore Filter ignore filter indicator

Data table
ID_REF VALUE ch1 Background ch1 Intensity Std Dev ch1 Background Std Dev ch1 Diameter ch1 Area ch1 Footprint ch1 Circularity ch1 Spot Uniformity ch1 Bkg. Uniformity ch1 Signal Noise Ratio ch1 Confidence Ignore Filter
1 366.269989 204.043472 154.289566 44.434299 147.338852 10000 10.377594 0.955604 0.995972 0.99884 8.242956 1 1
2 404.279999 182.869568 164.638702 18.892771 150.755859 10000 10.266143 0.965662 0.995567 0.999512 21.398661 1 1
3 403.299988 169.08696 169.814896 13.344774 147.98555 10000 12.239677 0.94395 0.995262 0.999596 30.221567 1 1
4 2569.120117 161.91304 698.861572 14.541204 121.530167 10000 12.811934 0.957038 0.980377 0.999634 176.678632 1 1
5 2542.659912 177.782608 824.435486 22.285252 121.267967 10000 10.609508 0.929395 0.97583 0.999344 114.096083 1 1
6 11841.62988 210.869568 4425.375 51.834793 115.899437 10000 9.642493 0.948575 0.870613 0.998802 228.449448 1 1
7 11812.79981 221.739136 4003.438965 51.673115 115.072563 10000 10.266143 0.937957 0.893883 0.998772 228.606304 1 1
8 11251.66016 191.652176 4701.182617 45.476875 123.349976 10000 12.239677 0.954539 0.874565 0.998695 247.414979 1 1
9 14485.58984 262.869568 5590.84668 86.191277 119.416435 10000 12.811934 0.960508 0.833931 0.99791 168.063294 1 1
10 1789.030029 219.782608 516.727905 64.056053 129.886215 10000 10.609508 0.944722 0.986252 0.998383 27.929133 1 1
11 1834.530029 184.391312 559.632324 33.663765 133.033951 10000 9.642493 0.926401 0.984261 0.999077 54.495688 1 1
12 8843.900391 183.08696 2388.315186 23.348959 118.882133 10000 10.266143 0.951829 0.925117 0.999359 378.770651 1 1
13 7460.459961 190.695648 1758.994873 35.345612 112.837929 10000 12.239677 0.948891 0.945084 0.999054 211.071746 1 1
14 1643.349976 192.91304 392.22464 26.491701 130.131042 10000 12.811934 0.904962 0.988434 0.999275 62.032633 1 1
15 1504.050049 188.478256 434.081787 29.704407 124.888702 10000 10.609508 0.908456 0.987923 0.999222 50.633903 1 1
16 1815.369995 186.91304 523.878662 32.889503 122.573364 10000 9.642493 0.962913 0.984734 0.999107 55.196029 1 1
17 1623.150024 169.91304 498.439484 21.693974 125.397415 10000 10.266143 0.955327 0.986229 0.999321 74.820319 1 1
18 2435.709961 179.869568 1373.446045 27.360064 127.661545 10000 12.239677 0.967559 0.966347 0.999336 89.02428 1 1
19 2427.030029 165.260864 1498.222168 17.443981 135.640396 10000 12.811934 0.943608 0.960556 0.999489 139.132805 1 1
20 893.26001 166.82608 286.741516 12.15675 141.835083 10000 10.609508 0.948168 0.991638 0.999626 73.478523 1 1

Total number of rows: 30000

Table truncated, full table size 3356 Kbytes.




Supplementary data files not provided
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