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Sample GSM119931 Query DataSets for GSM119931
Status Public on Jul 13, 2006
Title 13255128_CVgill1E_110905
Sample type RNA
 
Source name MGMA_194
Organism Crassostrea virginica
Characteristics adult, gill, field collection
Extracted molecule total RNA
Label CY3
 
Hybridization protocol 50% formamide. 2.4% SDS, 4X SSPE, 2.5X Denhardts
Description None
Data processing Ch1 Intensities read directly from the Microarray scanner.
 
Submission date Jul 12, 2006
Last update date Jul 12, 2006
Contact name MarineGenomics Project
E-mail(s) [email protected]
Phone 843-762-8869
Fax 843-762-8847
URL http://www.marinegenomics.org
Organization name MarineGenomics.org
Lab HML
Street address 331 Fort Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Platform ID GPL3994
Series (1)
GSE5293 Crassostrea array characterization

Data table header descriptions
ID_REF Incremental generic ID Number
VALUE Ch1 Intensity raw intensity values
ch1 Background ch1 Background
ch1 Intensity Std Dev ch1 Intensity Std Dev
ch1 Background Std Dev ch1 Background Std Dev
ch1 Diameter ch1 Diameter of spot
ch1 Area ch1 Area of spot
ch1 Footprint ch1 Footprint of spot
ch1 Circularity ch1 Circularity of spot
ch1 Spot Uniformity ch1 Spot Uniformity
ch1 Bkg. Uniformity ch1 Bkg. Uniformity
ch1 Signal Noise Ratio ch1 Signal Noise Ratio
ch1 Confidence ch1 Confidence
Ignore Filter ignore filter indicator

Data table
ID_REF VALUE ch1 Background ch1 Intensity Std Dev ch1 Background Std Dev ch1 Diameter ch1 Area ch1 Footprint ch1 Circularity ch1 Spot Uniformity ch1 Bkg. Uniformity ch1 Signal Noise Ratio ch1 Confidence Ignore Filter
1 354.21817 148.672729 68.770065 2.981763 194.133713 5500 15.011553 0.873036 0.996017 0.999847 118.794891 1 1
2 419.21817 151.800003 94.284576 3.439423 183.860046 5500 11.059279 0.891047 0.994598 0.999832 121.886197 1 1
3 450.527283 155.781815 106.678101 2.998091 187.120529 5500 7.160209 0.823492 0.994904 0.999847 150.271361 1 1
4 622.345459 155.163635 146.834534 3.989633 197.224426 5500 3.497075 0.857232 0.992264 0.999802 155.99065 1 1
5 598.181824 157.036362 95.952744 4.549984 197.708023 5500 2.27826 0.875455 0.994125 0.999756 131.468982 1 1
6 941.872742 156.345459 181.21228 5.389352 174.443207 5500 15.011553 0.874306 0.990402 0.999695 174.765479 1 1
7 1011.345459 159.490906 148.878677 4.826135 159.975372 5500 11.059279 0.822649 0.990387 0.999741 209.555975 1 1
8 720.218201 158.309097 137.043335 4.233345 158.777039 5500 7.160209 0.841451 0.992294 0.999756 170.129813 1 1
9 748.618164 158.05455 137.739761 3.658669 176.97937 5500 3.497075 0.870781 0.992554 0.999771 204.614893 1 1
10 767.854553 161.418182 111.470879 5.503167 175.534622 5500 2.27826 0.862857 0.99324 0.999725 139.529571 1 1
11 706.054565 155.018188 143.920807 4.3397 168.50296 5500 15.011553 0.856701 0.991821 0.999771 162.696622 1 1
12 800.599976 154.127274 157.21637 5.607715 164.681534 5500 11.059279 0.901499 0.992325 0.99968 142.767602 1 1
13 914.89093 155.72728 195.438217 4.836032 157.973099 5500 7.160209 0.82886 0.989029 0.999756 189.182153 1 1
14 1017.981812 156.581818 388.150055 5.964993 165.645157 5500 3.497075 0.885118 0.979004 0.99968 170.659334 1 1
15 1805.563599 157.163635 801.680908 6.361818 153.268631 5500 2.27826 0.837054 0.952637 0.99968 283.812527 1 1
16 739.472717 164.636368 146.297745 6.942525 190.157852 5500 15.011553 0.884293 0.992081 0.999664 106.513513 1 1
17 699.981812 157.636368 122.339157 5.797073 186.950348 5500 11.059279 0.899576 0.992798 0.99968 120.747447 1 1
18 552.345459 155.800003 117.760307 4.510892 191.49231 5500 7.160209 0.916367 0.994293 0.999771 122.447048 1 1
19 577.545471 155.109085 112.795593 3.789228 188.645309 5500 3.497075 0.902077 0.993927 0.999786 152.417716 1 1
20 606.527283 157.818176 109.025284 4.435091 191.990341 5500 2.27826 0.878143 0.994415 0.999771 136.756445 1 1

Total number of rows: 30000

Table truncated, full table size 3324 Kbytes.




Supplementary data files not provided
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