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Sample GSM119933 Query DataSets for GSM119933
Status Public on Jul 13, 2006
Title 13255119_Cggill3D_110905
Sample type RNA
 
Source name MGMA_196
Organism Magallana gigas
Characteristics adult, gill, aquacultured
Extracted molecule total RNA
Label CY3
 
Hybridization protocol 50% formamide. 2.4% SDS, 4X SSPE, 2.5X Denhardts
Description None
Data processing Ch1 Intensities read directly from the Microarray scanner.
 
Submission date Jul 12, 2006
Last update date Jul 12, 2006
Contact name MarineGenomics Project
E-mail(s) [email protected]
Phone 843-762-8869
Fax 843-762-8847
URL http://www.marinegenomics.org
Organization name MarineGenomics.org
Lab HML
Street address 331 Fort Johnson Rd
City Charleston
State/province SC
ZIP/Postal code 29412
Country USA
 
Platform ID GPL3994
Series (1)
GSE5293 Crassostrea array characterization

Data table header descriptions
ID_REF Incremental generic ID Number
VALUE Ch1 Intensity raw intensity values
ch1 Background ch1 Background
ch1 Intensity Std Dev ch1 Intensity Std Dev
ch1 Background Std Dev ch1 Background Std Dev
ch1 Diameter ch1 Diameter of spot
ch1 Area ch1 Area of spot
ch1 Footprint ch1 Footprint of spot
ch1 Circularity ch1 Circularity of spot
ch1 Spot Uniformity ch1 Spot Uniformity
ch1 Bkg. Uniformity ch1 Bkg. Uniformity
ch1 Signal Noise Ratio ch1 Signal Noise Ratio
ch1 Confidence ch1 Confidence
Ignore Filter ignore filter indicator

Data table
ID_REF VALUE ch1 Background ch1 Intensity Std Dev ch1 Background Std Dev ch1 Diameter ch1 Area ch1 Footprint ch1 Circularity ch1 Spot Uniformity ch1 Bkg. Uniformity ch1 Signal Noise Ratio ch1 Confidence Ignore Filter
1 620.018188 160.963638 130.080109 5.584249 194.788467 5500 22.452415 0.822725 0.993011 0.99971 111.029824 1 1
2 683.672729 161.818176 115.842178 6.128533 193.147415 5500 28.121695 0.896152 0.993607 0.999664 111.555684 1 1
3 613.163635 158.909088 108.303719 6.412582 192.156067 5500 25.906563 0.872223 0.993988 0.99968 95.618831 1 1
4 3553.581787 167.745453 586.327759 8.84479 109.980812 5500 24.15513 0.957587 0.964417 0.999542 401.771211 1 1
5 6203.054688 182.72728 1276.922241 14.799217 107.935837 5500 22.973696 0.928587 0.921707 0.999161 419.147486 1 1
6 54301.18359 208.527267 7178.922363 29.020334 116.447433 5500 2.614496 0.964576 0.778229 0.999283 1871.142597 1 1
7 63270.69141 284.509094 4261.09082 65.450256 113.960724 5500 17.133427 0.966817 1 1 966.698909 1 1
8 41020.28906 242.418182 10199.62891 42.097633 116.447433 5500 13.186153 0.950735 0.612488 0.998489 974.408436 1 1
9 29475.69141 228.127274 9816.137695 41.75238 118.882133 5500 9.284124 0.964192 0.664703 0.998367 705.964334 1 1
10 4239.981934 183.327271 719.028564 15.066586 122.052879 5500 5.524064 0.941869 0.961349 0.999176 281.416228 1 1
11 3625.763672 184.636368 692.685913 19.04319 125.143318 5500 2.614496 0.83701 0.965973 0.998962 190.396865 1 1
12 29636.74609 224.600006 6552.959473 42.731548 115.624466 5500 17.133427 0.956682 0.652664 0.99794 693.55657 1 1
13 36921.72656 207.254547 10684.70313 33.925419 127.411957 5500 13.186153 0.831219 0.475922 0.998322 1088.320434 1 1
14 2473.527344 182.454544 664.543457 14.930479 148.62944 5500 9.284124 0.784416 0.965134 0.999146 165.669657 1 1
15 2210.236328 172.290909 858.239441 8.245477 142.50676 5500 5.524064 0.867129 0.95842 0.999557 268.054402 1 1
16 36428.76172 204.199997 4686.860352 26.736298 118.345421 5500 2.614496 0.956967 0.741653 0.998535 1362.520804 1 1
17 37354.89063 233.363632 7331.62207 43.365955 116.720459 5500 24.418823 0.93546 0.597824 0.997849 861.387471 1 1
18 8562.90918 209.27272 3806.408936 24.437717 140.028183 5500 21.831154 0.855531 0.758362 0.998825 350.397258 1 1
19 9160.963867 178.690903 3985.877441 11.424264 123.091644 5500 19.721045 0.944462 0.814789 0.999405 801.886573 1 1
20 2193.963623 186.509094 334.285522 14.581664 120.741859 5500 18.25486 0.934309 0.981613 0.999146 150.460442 1 1

Total number of rows: 30000

Table truncated, full table size 3340 Kbytes.




Supplementary data files not provided
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