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GEO accession:
Sample GSM123741
Query DataSets for GSM123741
Status
Public on Oct 01, 2006
Title
12-A
Sample type
RNA
Source name
acute malaria-Cameroon
Organism
Homo sapiens
Characteristics
Malaria, Human, PBMC, in vivo
Extracted molecule
total RNA
Label
biotin
Description
acute malaria-Cameroon
Data processing
The data were analyzed with MAS5.0 using Affymetrix default settings.
Submission date
Jul 28, 2006
Last update date
Dec 13, 2011
Contact name
Maryanne Vahey
E-mail(s)
[email protected]
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL96
Series (1)
GSE5418
Gene Expression Analysis in Malaria Infection
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
612.1
P
0.000754
AFFX-BioB-M_at
1481.8
P
0.000110
AFFX-BioB-3_at
573.0
P
0.000581
AFFX-BioC-5_at
1945.2
P
0.000081
AFFX-BioC-3_at
1373.3
P
0.000060
AFFX-BioDn-5_at
1316.3
P
0.000060
AFFX-BioDn-3_at
9012.1
P
0.000110
AFFX-CreX-5_at
16666.3
P
0.000044
AFFX-CreX-3_at
23770.5
P
0.000044
AFFX-DapX-5_at
22.8
A
0.185131
AFFX-DapX-M_at
31.1
A
0.368438
AFFX-DapX-3_at
5.2
A
0.910522
AFFX-LysX-5_at
11.7
A
0.794288
AFFX-LysX-M_at
54.1
A
0.470241
AFFX-LysX-3_at
3.9
A
0.500000
AFFX-PheX-5_at
3.0
A
0.932339
AFFX-PheX-M_at
6.9
A
0.783476
AFFX-PheX-3_at
45.7
A
0.354453
AFFX-ThrX-5_at
15.5
A
0.737173
AFFX-ThrX-M_at
5.4
A
0.672921
Total number of rows:
22283
Table truncated, full table size
601 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123741.cel.gz
3.3 Mb
(ftp)
(http)
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