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GEO accession:
Sample GSM123756
Query DataSets for GSM123756
Status
Public on Oct 01, 2006
Title
16-U
Sample type
RNA
Source name
baseline uninfected
Organism
Homo sapiens
Characteristics
Malaria, Human, PBMC, in vivo
Extracted molecule
total RNA
Label
biotin
Description
baseline uninfected
Data processing
The data were analyzed with MAS5.0 using Affymetrix default settings.
Submission date
Jul 28, 2006
Last update date
Dec 13, 2011
Contact name
Maryanne Vahey
E-mail(s)
[email protected]
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL96
Series (1)
GSE5418
Gene Expression Analysis in Malaria Infection
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1481.2
P
0.000754
AFFX-BioB-M_at
3959.0
P
0.000052
AFFX-BioB-3_at
1532.6
P
0.000169
AFFX-BioC-5_at
4931.3
P
0.000127
AFFX-BioC-3_at
4226.5
P
0.000052
AFFX-BioDn-5_at
5518.9
P
0.000044
AFFX-BioDn-3_at
31341.8
P
0.000052
AFFX-CreX-5_at
52802.7
P
0.000044
AFFX-CreX-3_at
65028.1
P
0.000044
AFFX-DapX-5_at
71.9
A
0.175328
AFFX-DapX-M_at
144.3
A
0.354453
AFFX-DapX-3_at
12.7
A
0.949771
AFFX-LysX-5_at
81.2
A
0.205732
AFFX-LysX-M_at
57.8
A
0.686277
AFFX-LysX-3_at
65.7
A
0.368438
AFFX-PheX-5_at
14.9
A
0.945787
AFFX-PheX-M_at
19.6
A
0.843268
AFFX-PheX-3_at
22.8
A
0.783476
AFFX-ThrX-5_at
30.2
A
0.794268
AFFX-ThrX-M_at
84.0
A
0.631562
Total number of rows:
22283
Table truncated, full table size
605 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123756.cel.gz
3.4 Mb
(ftp)
(http)
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