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GEO accession:
Sample GSM123782
Query DataSets for GSM123782
Status
Public on Oct 01, 2006
Title
5-I
Sample type
RNA
Source name
experimental malaria-infected
Organism
Homo sapiens
Characteristics
Malaria, Human, PBMC, in vivo
Extracted molecule
total RNA
Label
biotin
Description
experimental malaria-infected
Data processing
The data were analyzed with MAS5.0 using Affymetrix default settings.
Submission date
Jul 28, 2006
Last update date
Dec 13, 2011
Contact name
Maryanne Vahey
E-mail(s)
[email protected]
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL96
Series (1)
GSE5418
Gene Expression Analysis in Malaria Infection
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1806.7
P
0.000258
AFFX-BioB-M_at
3813.0
P
0.000052
AFFX-BioB-3_at
1758.5
P
0.000052
AFFX-BioC-5_at
5511.5
P
0.000070
AFFX-BioC-3_at
4317.7
P
0.000052
AFFX-BioDn-5_at
7278.7
P
0.000044
AFFX-BioDn-3_at
31695.4
P
0.000044
AFFX-CreX-5_at
56860.6
P
0.000044
AFFX-CreX-3_at
77439.6
P
0.000044
AFFX-DapX-5_at
86.4
A
0.411380
AFFX-DapX-M_at
103.1
A
0.368438
AFFX-DapX-3_at
13.8
A
0.852061
AFFX-LysX-5_at
45.5
A
0.559354
AFFX-LysX-M_at
25.6
A
0.843268
AFFX-LysX-3_at
47.4
A
0.425962
AFFX-PheX-5_at
5.0
A
0.932322
AFFX-PheX-M_at
15.6
A
0.772364
AFFX-PheX-3_at
184.4
A
0.262827
AFFX-ThrX-5_at
67.0
A
0.617401
AFFX-ThrX-M_at
62.6
A
0.500000
Total number of rows:
22283
Table truncated, full table size
604 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123782.cel.gz
3.2 Mb
(ftp)
(http)
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