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GEO accession:
Sample GSM123787
Query DataSets for GSM123787
Status
Public on Oct 01, 2006
Title
6-U
Sample type
RNA
Source name
baseline uninfected
Organism
Homo sapiens
Characteristics
Malaria, Human, PBMC, in vivo
Extracted molecule
total RNA
Label
biotin
Description
baseline uninfected
Data processing
The data were analyzed with MAS5.0 using Affymetrix default settings.
Submission date
Jul 28, 2006
Last update date
Dec 13, 2011
Contact name
Maryanne Vahey
E-mail(s)
[email protected]
Phone
301-251-5058
Fax
301-762-7460
Organization name
Walter Reed Army Institute of Research
Department
Lab
Laboratory of Functional Genomics
Street address
1600 East Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Platform ID
GPL96
Series (1)
GSE5418
Gene Expression Analysis in Malaria Infection
Data table header descriptions
ID_REF
Affymetrix ID
VALUE
signal intensity output from MAS5.0 with target signal intensity being set to 500
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
2127.5
P
0.000297
AFFX-BioB-M_at
5297.0
P
0.000044
AFFX-BioB-3_at
3237.3
P
0.000081
AFFX-BioC-5_at
7979.0
P
0.000070
AFFX-BioC-3_at
6749.5
P
0.000052
AFFX-BioDn-5_at
11339.6
P
0.000044
AFFX-BioDn-3_at
44792.5
P
0.000044
AFFX-CreX-5_at
83333.1
P
0.000044
AFFX-CreX-3_at
119902.9
P
0.000044
AFFX-DapX-5_at
60.2
A
0.500000
AFFX-DapX-M_at
133.8
A
0.287743
AFFX-DapX-3_at
18.8
A
0.976071
AFFX-LysX-5_at
100.1
A
0.559354
AFFX-LysX-M_at
22.7
A
0.937071
AFFX-LysX-3_at
9.1
A
0.897835
AFFX-PheX-5_at
12.1
A
0.976071
AFFX-PheX-M_at
14.2
A
0.910522
AFFX-PheX-3_at
229.3
A
0.500000
AFFX-ThrX-5_at
46.0
A
0.724854
AFFX-ThrX-M_at
61.9
A
0.686277
Total number of rows:
22283
Table truncated, full table size
604 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM123787.cel.gz
3.1 Mb
(ftp)
(http)
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