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Sample GSM123873 Query DataSets for GSM123873
Status Public on Dec 31, 2006
Title Muscle_contraction_1d_rep421
Sample type RNA
 
Source name Muscle, contraction injury, 1 day post-injury, sample 421
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured by 150 in vivo eccentric contractions
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 1-day post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 28, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 7.6 A 0.949771
AFFX-MurIL10_at 40.3 A 0.250796
AFFX-MurIL4_at 19.5 A 0.195266
AFFX-MurFAS_at 26.4 A 0.205732
AFFX-BioB-5_at 219.8 P 0.000509
AFFX-BioB-M_at 369.6 P 0.000147
AFFX-BioB-3_at 190.3 P 0.000195
AFFX-BioC-5_at 674 P 0.000095
AFFX-BioC-3_at 523.8 P 0.00007
AFFX-BioDn-5_at 678.1 P 0.00006
AFFX-BioDn-3_at 2892.6 P 0.000127
AFFX-CreX-5_at 7158.7 P 0.000052
AFFX-CreX-3_at 10064.5 P 0.000044
AFFX-BioB-5_st 7.1 A 0.544587
AFFX-BioB-M_st 14.2 A 0.617401
AFFX-BioB-3_st 13 A 0.783476
AFFX-BioC-5_st 8.4 A 0.9273
AFFX-BioC-3_st 2.4 A 0.804734
AFFX-BioDn-5_st 50.5 A 0.205732
AFFX-BioDn-3_st 114.8 P 0.018281

Total number of rows: 12488

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided

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