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Sample GSM123988 Query DataSets for GSM123988
Status Public on Dec 31, 2006
Title Muscle_contraction_3d_rep449
Sample type RNA
 
Source name Muscle, contraction injury, 3 days post-injury, sample 449
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured by 150 in vivo eccentric contractions
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 3-days post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 5.5 A 0.904333
AFFX-MurIL10_at 8.5 A 0.51489
AFFX-MurIL4_at 21.7 A 0.275146
AFFX-MurFAS_at 14.6 A 0.41138
AFFX-BioB-5_at 193.1 P 0.002556
AFFX-BioB-M_at 204.7 P 0.000147
AFFX-BioB-3_at 146.2 P 0.001593
AFFX-BioC-5_at 512.9 P 0.000169
AFFX-BioC-3_at 471.2 P 0.000081
AFFX-BioDn-5_at 451.7 P 0.00007
AFFX-BioDn-3_at 2355.3 P 0.000147
AFFX-CreX-5_at 4633.7 P 0.000044
AFFX-CreX-3_at 7909.6 P 0.000044
AFFX-BioB-5_st 29.2 A 0.313723
AFFX-BioB-M_st 57.8 A 0.60308
AFFX-BioB-3_st 14.8 A 0.834139
AFFX-BioC-5_st 10.5 A 0.937071
AFFX-BioC-3_st 4.8 A 0.794268
AFFX-BioDn-5_st 54.3 A 0.287743
AFFX-BioDn-3_st 84.8 A 0.0727

Total number of rows: 12488

Table truncated, full table size 316 Kbytes.




Supplementary data files not provided

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