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Sample GSM123992 Query DataSets for GSM123992
Status Public on Dec 31, 2006
Title Muscle_contraction_6h_rep445
Sample type RNA
 
Source name Muscle, contraction injury, 6 hours post-injury, sample 445
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured by 150 in vivo eccentric contractions
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 6-hours post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 6.3 A 0.921998
AFFX-MurIL10_at 3.9 A 0.699394
AFFX-MurIL4_at 16.8 A 0.686277
AFFX-MurFAS_at 52.6 A 0.078002
AFFX-BioB-5_at 345.8 P 0.000446
AFFX-BioB-M_at 581.4 P 0.000081
AFFX-BioB-3_at 264.4 P 0.000127
AFFX-BioC-5_at 996 P 0.000081
AFFX-BioC-3_at 745.5 P 0.000044
AFFX-BioDn-5_at 815.4 P 0.000052
AFFX-BioDn-3_at 5612.7 P 0.00006
AFFX-CreX-5_at 8603.5 P 0.000044
AFFX-CreX-3_at 15138.2 P 0.000044
AFFX-BioB-5_st 29.2 A 0.300606
AFFX-BioB-M_st 11.2 A 0.724854
AFFX-BioB-3_st 15.8 A 0.737173
AFFX-BioC-5_st 10.9 A 0.904333
AFFX-BioC-3_st 3.7 A 0.760937
AFFX-BioDn-5_st 117.8 A 0.0727
AFFX-BioDn-3_st 98.6 P 0.028457

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

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