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Sample GSM123995 Query DataSets for GSM123995
Status Public on Dec 31, 2006
Title Muscle_contraction_7d_rep453
Sample type RNA
 
Source name Muscle, contraction injury, 7 days post-injury, sample 453
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured by 150 in vivo eccentric contractions
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 7-days post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.3 A 0.979978
AFFX-MurIL10_at 15.4 A 0.544587
AFFX-MurIL4_at 10.8 A 0.354453
AFFX-MurFAS_at 22.6 A 0.275146
AFFX-BioB-5_at 288.7 P 0.00034
AFFX-BioB-M_at 451 P 0.00007
AFFX-BioB-3_at 230.6 P 0.000225
AFFX-BioC-5_at 776.7 P 0.00006
AFFX-BioC-3_at 691.9 P 0.000052
AFFX-BioDn-5_at 861.1 P 0.000052
AFFX-BioDn-3_at 3442.8 P 0.00007
AFFX-CreX-5_at 8513.1 P 0.000044
AFFX-CreX-3_at 11653.8 P 0.000044
AFFX-BioB-5_st 35.9 A 0.287743
AFFX-BioB-M_st 40.8 A 0.455413
AFFX-BioB-3_st 13.9 A 0.737173
AFFX-BioC-5_st 9.1 A 0.916408
AFFX-BioC-3_st 4.2 A 0.724854
AFFX-BioDn-5_st 59.7 A 0.139482
AFFX-BioDn-3_st 100.5 P 0.011384

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

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