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Sample GSM123999 Query DataSets for GSM123999
Status Public on Dec 31, 2006
Title Muscle_freeze_1d_rep422
Sample type RNA
 
Source name Muscle, freeze injury, 1 day post-injury, sample 422
Organism Mus musculus
Characteristics Strain: C57BL/6J
Gender: female
Age: 2-3 months
Tissue: Tibialis anterior muscle
Biomaterial provider Petia Simeonova (NIOSH)
Treatment protocol Injured using 6-mm diameter steel probe cooled to temperature of dry ice; applied for 10 seconds
Extracted molecule total RNA
Extraction protocol Homogenize in TRIzol followed by purification with Qiagen RNeasy Mini kit
Label Phycoerythrin
Label protocol As per Affmetrix Expression Analysis Technical Manual
 
Hybridization protocol As per Affmetrix Expression Analysis Technical Manual
Scan protocol As per Affmetrix Expression Analysis Technical Manual
Description Mouse sacrificed at 1-day post-injury and injured tibialis anterior muscle excised
Data processing MAS5.0
 
Submission date Jul 30, 2006
Last update date Jul 31, 2006
Contact name Petia P Simeonova
E-mail(s) [email protected]
Phone 304-285-6156
Organization name NIOSH, CDC
Street address 1095 Willowdale Rd.
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platform ID GPL81
Series (1)
GSE5413 Comparison of gene expression for contraction- and freeze-induced skeletal muscle injuries

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL Presence (P) or absence (A) of gene expression
DETECTION P-VALUE Level of statistical significance for detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 10.4 A 0.921998
AFFX-MurIL10_at 5 A 0.631562
AFFX-MurIL4_at 3.3 A 0.876428
AFFX-MurFAS_at 28.8 A 0.216524
AFFX-BioB-5_at 353.8 P 0.000297
AFFX-BioB-M_at 832.6 P 0.00006
AFFX-BioB-3_at 331.6 P 0.000081
AFFX-BioC-5_at 1151.3 P 0.00007
AFFX-BioC-3_at 789.3 P 0.000052
AFFX-BioDn-5_at 900.7 P 0.000044
AFFX-BioDn-3_at 5632.1 P 0.000052
AFFX-CreX-5_at 8799 P 0.000044
AFFX-CreX-3_at 16591.2 P 0.000044
AFFX-BioB-5_st 37.2 A 0.216524
AFFX-BioB-M_st 81 A 0.327079
AFFX-BioB-3_st 64.2 A 0.5
AFFX-BioC-5_st 18.7 A 0.814869
AFFX-BioC-3_st 12.1 A 0.48511
AFFX-BioDn-5_st 133.6 A 0.062929
AFFX-BioDn-3_st 171.1 P 0.002867

Total number of rows: 12488

Table truncated, full table size 315 Kbytes.




Supplementary data files not provided

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