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GEO accession:
Sample GSM1245251
Query DataSets for GSM1245251
Status
Public on Jan 01, 2014
Title
48 hpf control
Sample type
RNA
Source name
48 hpf eyes
Organism
Danio rerio
Characteristics
tissue: embryonic eye
treatment: none
developmental stage: 48 hpf
Growth protocol
28.5 deg C
Extracted molecule
total RNA
Extraction protocol
total RNA qiagen from dissected eye tissues
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
Affymetrix protocol
Data processing
MAS5
Submission date
Oct 18, 2013
Last update date
Jan 01, 2014
Contact name
Deborah Lynn Stenkamp
E-mail(s)
[email protected]
Phone
208-885-8963
Organization name
University of Idaho
Department
Biological Sciences
Street address
875 Perimeter Drive, MS 3051
City
Moscow
State/province
Idaho
ZIP/Postal code
83844-3051
Country
USA
Platform ID
GPL1319
Series (1)
GSE51427
Eye-Specific Gene Expression following Embryonic Ethanol Exposure in Zebrafish: Roles for Heat Shock Factor 1
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
231.79
P
4.42873e-05
AFFX-BioB-M_at
385.128
P
4.42873e-05
AFFX-BioB-3_at
314.704
P
6.02111e-05
AFFX-BioC-5_at
654.593
P
4.42873e-05
AFFX-BioC-3_at
340.472
P
4.42873e-05
AFFX-BioDn-5_at
824.201
P
4.42873e-05
AFFX-BioDn-3_at
1827.53
P
4.42873e-05
AFFX-CreX-5_at
3056.93
P
4.42873e-05
AFFX-CreX-3_at
4149.96
P
4.42873e-05
AFFX-DapX-5_at
4.15566
A
0.368438
AFFX-DapX-M_at
0.158865
A
0.999028
AFFX-DapX-3_at
3.62202
A
0.382599
AFFX-LysX-5_at
0.19159
A
0.860518
AFFX-LysX-M_at
0.770809
A
0.824693
AFFX-LysX-3_at
0.265511
A
0.904333
AFFX-PheX-5_at
0.648287
A
0.783476
AFFX-PheX-M_at
3.48359
A
0.340661
AFFX-PheX-3_at
1.39977
A
0.470241
AFFX-ThrX-5_at
2.22047
A
0.686277
AFFX-ThrX-M_at
1.95573
A
0.645547
Total number of rows:
15617
Table truncated, full table size
577 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1245251_Bhavani-8-48hpf-C-020609.CEL.gz
2.2 Mb
(ftp)
(http)
CEL
GSM1245251_Bhavani-8-48hpf-C-020609.CHP.gz
85.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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