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| Status |
Public on Dec 09, 2007 |
| Title |
DMSP_20A_647 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Silicibacter pomeroyi DSS-3, control, 0 min.
|
| Organism |
Ruegeria pomeroyi |
| Characteristics |
DSS3
|
| Extracted molecule |
total RNA |
| Label |
AlexaFluor 555
|
| |
|
| Channel 2 |
| Source name |
Silicibacter pomeroyi DSS-3, DMSP treatment, 20 min.
|
| Organism |
Ruegeria pomeroyi |
| Characteristics |
DSS3
|
| Extracted molecule |
total RNA |
| Label |
AlexaFluor 647
|
| |
|
| |
| Description |
Dye in each single use vial was dissolved in 11 µl DMSO, and added to the aa-aRNA, mixed, and incubated for 1 hour in the dark at room temperature
|
| Data processing |
Lowess M log ratio
|
| |
|
| Submission date |
Aug 09, 2006 |
| Last update date |
May 30, 2007 |
| Contact name |
Shulei Sun |
| E-mail(s) |
[email protected]
|
| Phone |
(706)542-0341
|
| Organization name |
UGA
|
| Department |
Marine Science
|
| Street address |
Department of Marine Science
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30605 |
| Country |
USA |
| |
|
| Platform ID |
GPL4067 |
| Series (1) |
| GSE5480 |
Global response of Silicibacter pomeroyi strain DSS3 to dimethyl sulfoniopropionate (DMSP) |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
log2 (treatment/control) |
| B532 Median |
channel 1 (control) background |
| B635 Median |
channel 2 (treatment) background |
| F532 Median |
channel 1 signal |
| F635 Median |
channel 2 signal |
| Data table |
| ID_REF |
VALUE |
B532 Median |
B635 Median |
F532 Median |
F635 Median |
| 1 |
1.25569 |
3854 |
869 |
1402 |
702 |
| 2 |
-0.830115 |
4203 |
949 |
1534 |
603 |
| 3 |
-0.420158 |
4179 |
903 |
1577 |
640 |
| 4 |
0.540091 |
3909 |
893 |
1408 |
655 |
| 5 |
0.279054 |
3925 |
866 |
1521 |
728 |
| 6 |
-0.53182 |
4017 |
917 |
1662 |
670 |
| 7 |
-0.90322 |
4140 |
854 |
1621 |
628 |
| 8 |
-1.64519 |
3995 |
868 |
1732 |
639 |
| 9 |
-0.325905 |
3911 |
856 |
1458 |
632 |
| 10 |
-0.425888 |
4053 |
880 |
1580 |
641 |
| 11 |
-0.53422 |
4012 |
935 |
1940 |
799 |
| 12 |
-0.3175 |
3897 |
848 |
1766 |
806 |
| 13 |
1.28631 |
3684 |
859 |
1330 |
618 |
| 14 |
0.111086 |
4018 |
878 |
1524 |
647 |
| 15 |
-1.31365 |
4124 |
914 |
1759 |
643 |
| 16 |
-1.10452 |
3870 |
848 |
1415 |
609 |
| 17 |
1.0171 |
3745 |
862 |
1390 |
669 |
| 18 |
0.195768 |
4107 |
922 |
1490 |
630 |
| 19 |
0.661582 |
4144 |
935 |
1512 |
627 |
| 20 |
-0.997698 |
3908 |
871 |
1357 |
545 |
Total number of rows: 12395
Table truncated, full table size 408 Kbytes.
| Supplementary data files not provided |
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