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Sample GSM1267176 Query DataSets for GSM1267176
Status Public on Jan 01, 2015
Title n5 dnNrf2 (wt)
Sample type RNA
 
Source name wt 3
Organism Mus musculus
Characteristics genotype: wt
age: P2.5
tissue: skin
Treatment protocol No treatment
Growth protocol Mouse skin was collected at newborn mice at P2.5
Extracted molecule total RNA
Extraction protocol Trizol-based total RNA extraction
Label Cy3
Label protocol 100ng of total RNA were labeled with Cy3 according to Agilent's labeling protocol
 
Hybridization protocol Microarray hybridization was performed at 55°C for 20 hours in Agilent's microarray hybridization chambers, followed by wash procedures according to the manufacturer’s recommended protocols
Scan protocol Microarray was scanned in an Agilent scanner at 5μm resolution, and the array data was extracted with Agilent feature extraction software using the miRNA_105_Jan09 protocol
Description n5 dnNrf2 (wt)
Data processing Agilent Feature Extraction Software (version 10.7.3.1) was used.
 
Submission date Nov 18, 2013
Last update date Jan 01, 2015
Contact name Svitlana Kurinna
E-mail(s) [email protected]
Organization name University of Manchester
Street address Dover Street
City Manchester
ZIP/Postal code M13 9PT
Country United Kingdom
 
Platform ID GPL15547
Series (1)
GSE52454 Functional analysis of the cytoprotective transcription factor Nrf2 in keratinocytes: Identification of Nrf2-regulated miRNAs

Data table header descriptions
ID_REF
VALUE Normalized log2 signal intensity

Data table
ID_REF VALUE
Blank 0.1
NC1_00000197 0.1
NC1_00000215 0.1
NC2_00079215 0.1
NC2_00092197 0.1
NC2_00106057 0.1
NC2_00122731 0.1
NegativeControl 0.1
dmr_285 4772.16
dmr_3 18563.5
dmr_308 0.1
dmr_316 0.1
dmr_31a 2049.17
dmr_6 6876.11
hur_1 58473.6
hur_2 328678
hur_4 26590.6
hur_5 0.1
hur_6 65291.7
mcmv-miR-M23-1-3p 0.1

Total number of rows: 1157

Table truncated, full table size 21 Kbytes.




Supplementary file Size Download File type/resource
GSM1267176_n5_dnNrf.txt.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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