|
| Status |
Public on Oct 02, 2014 |
| Title |
Patient-derived xenograft BCP-ALL-4 |
| Sample type |
RNA |
| |
|
| Source name |
Patient-derived xenograft cells
|
| Organism |
Homo sapiens |
| Characteristics |
host strain: NOD/SCID
age at injection: xenograft cells Injected at 6-10 weeks
tissue: Xenograft cells (>95% hCD45+ cells) from mouse spleens
xenograft: BCP-ALL
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted with a combination of Trizol reagent and QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA was prepared with the Illumina TotalPrep RNA kit for Illumina arrays
|
| |
|
| Hybridization protocol |
Standard Illumina hybridization protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
patient-derived xenograft cells
|
| Data processing |
The data were max-collapsed, log2-transformed and quantile normalised using GenePattern
|
| |
|
| Submission date |
Dec 04, 2013 |
| Last update date |
Oct 02, 2014 |
| Contact name |
Santi Suryani |
| E-mail(s) |
[email protected]
|
| Phone |
+61 2 9385 1884
|
| Organization name |
Children's Cancer Institute Australia for Medical Research
|
| Department |
Leukaemia Biology
|
| Street address |
Level 5 Lowy Cancer Research Centre Gate 9 High St
|
| City |
Sydney |
| State/province |
NSW |
| ZIP/Postal code |
2052 |
| Country |
Australia |
| |
|
| Platform ID |
GPL10904 |
| Series (1) |
| GSE52991 |
Genome-wide analysis of basal gene expression in pediatric acute lymphoblastic leukemia xenograft cells |
|
