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Sample GSM128492 Query DataSets for GSM128492
Status Public on Apr 30, 2007
Title 1353_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 10964.1172 102.1424 G 118.2312 11044.1172 6456.0000 10698.8438 201 15.9975357055664 93.4111838953085 80.3073 80.0000 8.9408 226 102.1424
1002 1 921.9386 8.5888 G 10.7799 1002.9386 1104.0000 534.0391 116 12.1530151367188 93.038187988112 80.9739 81.0000 8.0255 119 8.5888
1003 1 8.2951 0.0773 L 0.9328 92.2951 91.0000 15.1174 61 8.81292343139648 98.9467581796099 84.0973 84.0000 9.9645 117 0.0773
1004 1 15.6667 0.1460 G 1.0203 99.6667 97.0000 19.8375 66 9.16699600219727 97.6872205657312 83.6174 84.0000 9.1248 119 0.1460
1005 1 14.7000 0.1369 G 1.0035 98.7000 95.0000 19.6319 40 7.13649654388428 98.3539656890178 83.2088 84.0000 9.5693 188 0.1369
1006 1 22.7288 0.2117 G 1.0845 102.7288 100.0000 16.4356 59 8.66724491119385 94.7210079284099 81.3090 80.0000 9.8140 184 0.2117
1007 1 22.6441 0.2110 G 1.0914 103.6441 101.0000 16.5168 59 8.66724491119385 94.9670521145456 80.1538 81.0000 9.3114 188 0.2110
1008 1 11720.9590 109.1932 G 124.3036 11801.9590 8533.0000 10989.4092 197 15.8375558853149 94.9446125767551 81.3364 81.0000 9.2964 228 109.1932
1009 1 350.4950 3.2652 G 4.5586 431.4950 448.0000 149.3518 101 11.3400707244873 94.656021884544 81.5659 81.0000 9.1040 188 3.2652
1010 1 532.6633 4.9623 G 6.4662 611.6633 641.0000 276.1516 100 11.2837915420532 94.5934433642458 79.8846 79.0000 10.3956 188 4.9623
1011 1 70.5059 0.6568 G 1.6206 150.5059 148.0000 32.4181 85 10.4031419754028 92.8709187302259 80.4121 80.0000 8.5806 188 0.6568
1012 1 27.4571 0.2558 G 1.1523 105.4571 103.0000 15.9505 70 9.44069766998291 91.521659145031 77.2637 78.0000 9.0144 188 0.2558
1013 1 33.3704 0.3109 G 1.2234 111.3704 110.0000 16.6559 81 10.1554126739502 91.0317849439944 79.3132 78.0000 8.6879 188 0.3109
1014 1 13.7442 0.1280 G 1.0006 93.7442 95.0000 13.2333 43 7.3992772102356 93.6901743789558 80.5824 80.0000 9.1268 188 0.1280
1015 1 11771.5127 109.6642 G 124.6192 11852.5127 8698.0000 11088.9287 195 15.7569580078125 95.1098371020263 81.9251 81.0000 9.4066 235 109.6642
1016 1 48.5500 0.4523 G 1.3690 127.5500 124.0000 20.2743 80 10.0925302505493 93.1668517435408 79.9889 79.0000 9.4446 186 0.4523
1017 1 32.2467 0.3004 G 1.2067 112.2467 111.0000 16.8516 77 9.90148735046387 93.021944665025 79.7127 80.0000 8.6813 187 0.3004
1018 1 12.3509 0.1151 L 0.9834 93.3509 95.0000 11.1473 57 8.51907634735107 94.9313835409164 81.3462 81.0000 9.2876 188 0.1151
1019 1 17.1786 0.1600 G 1.0180 97.1786 98.0000 13.4935 56 8.444016456604 95.4634737809272 79.9286 80.0000 10.3090 188 0.1600
1020 1 34.2963 0.3195 G 1.1950 115.2963 113.0000 15.4755 81 10.1554126739502 96.4859086790342 82.1829 81.0000 10.3239 181 0.3195

Total number of rows: 54359

Table truncated, full table size 6969 Kbytes.




Supplementary file Size Download File type/resource
GSM128492.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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