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Sample GSM128494 Query DataSets for GSM128494
Status Public on Apr 30, 2007
Title 1353_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 19367.5781 353.2007 G 191.6831 19448.5781 7135.0000 20515.9609 151 13.8657550811768 101.462132143834 83.3917 81.0000 13.6414 124 353.2007
1002 1 877.3535 16.0000 G 10.0785 956.3535 1048.0000 527.5560 101 11.3400707244873 94.8908494771495 79.2686 79.0000 10.5939 181 16.0000
1003 1 -1.5200 -0.0277 L 0.8129 75.4800 76.0000 11.2787 50 7.97884559631348 92.8580158748432 76.8559 77.0000 10.5720 122 -0.0277
1004 1 1.4884 0.0271 L 0.8438 80.4884 79.0000 10.9191 86 10.4641580581665 95.3908709161402 79.2320 79.0000 10.9272 187 0.0271
1005 1 2.1936 0.0400 L 0.8570 78.1936 77.0000 12.7188 31 6.2825493812561 91.2450648363171 76.3216 76.0000 10.1634 177 0.0400
1006 1 11.7632 0.2145 L 0.9541 87.7632 89.0000 10.5192 38 6.95579624176025 91.9833015638245 77.2468 76.0000 10.6555 164 0.2145
1007 1 2.2414 0.0409 L 0.8440 79.2414 78.0000 12.1513 87 10.5248203277588 93.8852659599335 77.9474 77.0000 11.2568 236 0.0409
1008 1 19154.4277 349.3136 G 192.3186 19237.4277 6408.0000 21118.1484 166 14.5381488800049 100.028948748123 83.0333 83.0000 11.3526 124 349.3136
1009 1 265.1685 4.8358 G 3.6820 343.1685 363.0000 106.7984 89 10.6451082229614 93.2010683828895 77.3462 78.0000 10.1340 188 4.8358
1010 1 493.8977 9.0071 G 6.1918 569.8977 628.0000 259.4371 88 10.5851345062256 92.041167857084 76.3333 76.0000 10.6941 145 9.0071
1011 1 51.7571 0.9439 G 1.3800 128.7571 128.0000 19.0956 70 9.44069766998291 93.3052425852272 75.9341 77.0000 10.8702 188 0.9439
1012 1 35.5574 0.6484 G 1.2070 113.5574 113.0000 15.6734 61 8.81292343139648 94.0845564425845 77.9945 78.0000 10.7230 188 0.6484
1013 1 31.1639 0.5683 G 1.1610 108.1639 107.0000 13.1301 61 8.81292343139648 93.1664154593777 76.6648 77.0000 10.7776 188 0.5683
1014 1 2.0366 0.0371 L 0.8563 80.0366 77.0000 12.2100 82 10.2179079055786 93.4665316863958 77.8289 78.0000 10.3110 236 0.0371
1015 1 20265.4883 369.5757 G 203.4794 20346.4883 8246.0000 21736.3867 178 15.0544557571411 99.9928877079896 81.9750 81.0000 12.6619 124 369.5757
1016 1 5.5333 0.1009 L 0.8809 87.5333 88.0000 8.6785 30 6.18038702011108 99.3671594204958 82.1374 82.0000 11.5781 188 0.1009
1017 1 2.0723 0.0378 L 0.8471 81.0723 78.0000 13.4126 83 10.2800235748291 95.703962135163 79.8158 79.0000 11.1360 236 0.0378
1018 1 8.9118 0.1625 L 0.9207 85.9118 86.0000 12.6034 34 6.57952451705933 93.3078154603544 77.9890 77.0000 10.8719 188 0.1625
1019 1 4.5946 0.0838 L 0.8792 84.5946 84.0000 14.0625 37 6.86366271972656 96.220057726808 80.3846 80.0000 10.8134 188 0.0838
1020 1 11.7321 0.2140 L 0.9577 92.7321 96.0000 15.5339 56 8.444016456604 96.8287504226724 81.5630 81.0000 10.5525 123 0.2140

Total number of rows: 54359

Table truncated, full table size 6938 Kbytes.




Supplementary file Size Download File type/resource
GSM128494.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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