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Sample GSM128527 Query DataSets for GSM128527
Status Public on Apr 30, 2007
Title 2320_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6485.6465 93.2228 C 48.8438 6586.6465 4300.0000 6338.0405 152 13.9115924835205 134.851314902936 106.3500 101.0000 22.5675 124 93.2228
1002 1 445.1705 6.3988 C 4.0550 547.1705 592.0000 160.8527 88 10.5851345062256 134.938014102232 106.1209 102.0000 21.9587 188 6.3988
1003 1 24.4865 0.3520 CL 0.9655 125.4865 112.0000 34.2831 37 6.86366271972656 129.974489904587 104.0220 101.0000 19.3163 188 0.3520
1004 1 62.9245 0.9045 C 1.2885 160.9245 141.0000 56.9405 53 8.21472454071045 124.888258762851 101.9379 98.0000 17.9255 183 0.9045
1005 1 25.5556 0.3673 CL 0.9918 123.5556 120.0000 20.4543 45 7.56939744949341 124.579693550718 100.2527 98.0000 17.7198 188 0.3673
1006 1 36.9012 0.5304 G 1.1665 133.9012 126.0000 41.8591 81 10.1554126739502 114.789188868796 97.1858 97.0000 11.8595 117 0.5304
1007 1 27.3830 0.3936 G 1.0098 122.3830 122.0000 13.0849 47 7.73577785491943 121.190135724973 98.7416 95.0000 17.4601 184 0.3936
1008 1 6920.4902 99.4732 G 61.3026 7015.4902 4042.0000 6796.2256 155 14.04820728302 114.44029317774 95.5000 95.0000 12.9602 124 99.4732
1009 1 188.8625 2.7147 G 2.4294 282.8625 302.0000 66.7821 80 10.0925302505493 116.434597627285 95.4645 94.0000 14.9564 161 2.7147
1010 1 294.4177 4.2319 G 3.5092 386.4177 416.0000 127.6017 79 10.0292530059814 110.115756537988 92.6552 92.0000 12.0772 180 4.2319
1011 1 153.6593 2.2087 G 2.3231 242.6593 253.0000 54.5546 91 10.7640514373779 104.454540043195 89.5989 89.0000 10.3030 188 2.2087
1012 1 48.9867 0.7041 G 1.3601 134.9867 137.0000 19.5506 75 9.77204990386963 99.2445642061422 86.0934 86.0000 8.8297 188 0.7041
1013 1 35.0656 0.5040 G 1.1887 123.0656 120.0000 17.9771 61 8.81292343139648 103.528150592182 88.6851 88.0000 10.3521 187 0.5040
1014 1 32.0847 0.4612 G 1.1467 120.0847 117.0000 12.1715 59 8.66724491119385 104.723689539855 88.8011 88.0000 11.1491 187 0.4612
1015 1 6854.7866 98.5288 G 65.5537 6944.7866 4694.0000 6831.2930 166 14.5381488800049 105.940342361574 91.4500 90.0000 10.6269 124 98.5288
1016 1 29.8906 0.4296 G 1.1329 119.8906 118.0000 14.8273 64 9.02703380584717 105.827589229428 90.1538 90.0000 10.5517 188 0.4296
1017 1 39.3611 0.5658 G 1.2248 129.3611 127.0000 15.3689 72 9.57461452484131 105.614638818481 90.3626 90.0000 10.4098 188 0.5658
1018 1 20.3478 0.2925 G 1.0416 109.3478 110.0000 9.0343 46 7.65303993225098 104.977387099152 89.5495 89.0000 10.6516 188 0.2925
1019 1 16.3571 0.2351 G 1.0335 105.3571 105.0000 12.6807 56 8.444016456604 101.944447757493 89.5193 89.0000 8.6296 187 0.2351
1020 1 27.0635 0.3890 G 1.1164 117.0635 116.0000 11.2925 63 8.95623207092285 104.855890809752 90.9172 90.0000 9.9039 175 0.3890

Total number of rows: 54359

Table truncated, full table size 6942 Kbytes.




Supplementary file Size Download File type/resource
GSM128527.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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