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Sample GSM128557 Query DataSets for GSM128557
Status Public on Apr 30, 2007
Title 2791_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 9292.6484 166.0452 G 81.6949 9390.6484 8543.0000 7766.0571 220 16.7365684509277 114.947856481397 98.2757 98.0000 11.2986 222 166.0452
1002 1 186.6883 3.3358 G 2.4594 285.6883 279.0000 97.6231 156 14.093451499939 116.163275277402 98.6854 99.0000 11.4422 184 3.3358
1003 1 22.9500 0.4101 G 1.0774 117.9500 115.0000 25.5380 102 11.396071434021 109.480830271103 95.4455 95.0000 9.6539 105 0.4101
1004 1 24.3582 0.4352 G 1.0729 121.3582 122.0000 14.7928 67 9.23618125915527 113.110818057751 96.9548 97.0000 10.7405 161 0.4352
1005 1 31.0000 0.5539 G 1.1254 124.0000 123.0000 16.3028 55 8.36828422546387 110.180331862691 94.5966 93.0000 11.4536 182 0.5539
1006 1 25.3276 0.4526 G 1.0699 119.3276 121.0000 12.4712 58 8.59348011016846 111.534644920995 95.4382 94.0000 11.6898 184 0.4526
1007 1 30.3662 0.5426 G 1.1313 125.3662 122.0000 15.7348 71 9.50789165496826 110.817417437353 95.2444 95.0000 10.5449 186 0.5426
1008 1 5955.5444 106.4163 G 56.6151 6047.5444 3982.0000 5991.1494 160 14.2729930877686 106.818647612989 92.1083 92.0000 9.8791 124 106.4163
1009 1 238.4235 4.2603 G 3.0743 330.4235 355.0000 94.1890 85 10.4031419754028 107.480477887927 92.7857 92.0000 10.3203 188 4.2603
1010 1 301.8000 5.3927 G 3.5375 396.8000 450.0000 142.8818 80 10.0925302505493 112.168469339952 95.4350 95.0000 11.4456 183 5.3927
1011 1 45.1250 0.8063 G 1.2762 138.1250 137.0000 20.2148 72 9.57461452484131 108.228612762549 93.0055 93.0000 10.1524 188 0.8063
1012 1 50.2031 0.8971 G 1.3101 144.2031 137.0000 38.0572 64 9.02703380584717 110.069310909102 93.8791 94.0000 10.7129 188 0.8971
1013 1 27.6207 0.4935 G 1.1003 124.6207 123.0000 16.0396 58 8.59348011016846 113.258417967952 96.3242 97.0000 10.8389 188 0.4935
1014 1 21.0909 0.3769 G 1.0418 118.0909 119.0000 11.9031 55 8.36828422546387 113.356642151525 97.1484 97.0000 10.9044 188 0.3769
1015 1 7186.5586 128.4126 G 58.3006 7286.5586 6508.0000 6152.4351 147 13.6808700561523 124.982463776319 101.2069 100.0000 16.6550 120 128.4126
1016 1 67.7200 1.2101 G 1.4693 163.7200 164.0000 21.0691 75 9.77204990386963 111.424388111534 96.3094 96.0000 10.2829 187 1.2101
1017 1 26.7924 0.4787 G 1.0756 125.7924 124.0000 16.1635 53 8.21472454071045 116.950682315306 99.1154 99.0000 11.9671 188 0.4787
1018 1 17.6279 0.3150 L 0.9979 117.6279 118.0000 12.5865 43 7.3992772102356 117.871107235435 100.0000 100.0000 11.9141 188 0.3150
1019 1 59.6046 1.0650 G 1.1359 164.6046 142.0000 62.5077 43 7.3992772102356 144.917079072575 111.6703 105.0000 26.6114 188 1.0650
1020 1 23.8182 0.4256 G 1.0438 120.8182 119.0000 12.2208 55 8.36828422546387 115.744623623065 98.6538 97.0000 12.4964 188 0.4256

Total number of rows: 54359

Table truncated, full table size 6954 Kbytes.




Supplementary file Size Download File type/resource
GSM128557.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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