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Sample GSM128572 Query DataSets for GSM128572
Status Public on Apr 30, 2007
Title 1688_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 12708.3691 149.9587 G 116.7540 12796.3691 5201.0000 13797.1670 189 15.5126485824585 109.601100372387 88.1886 88.0000 14.4007 236 149.9587
1002 1 857.6823 10.1206 G 9.0075 945.6823 1054.0000 445.7577 109 11.7806243896484 104.988163338684 87.5200 88.0000 11.3254 129 10.1206
1003 1 16.9691 0.2002 L 0.9503 103.9691 98.0000 24.3342 97 11.1132459640503 109.410059072761 89.2721 87.0000 14.9400 153 0.2002
1004 1 9.7018 0.1145 L 0.9267 92.7018 90.0000 12.6934 57 8.51907634735107 100.035820717346 83.8833 83.0000 11.3572 124 0.1145
1005 1 8.8611 0.1046 L 0.9257 90.8611 88.0000 14.6290 36 6.7702751159668 98.1521321577286 81.5872 82.0000 10.7681 178 0.1046
1006 1 22.9459 0.2708 G 1.0657 102.9459 103.0000 16.8891 37 6.86366271972656 96.6025393519912 80.0495 80.0000 11.0684 188 0.2708
1007 1 36.4000 0.4295 G 1.1637 123.4000 122.0000 16.3230 60 8.74038791656494 106.03921022291 86.3956 87.0000 12.6928 188 0.4295
1008 1 14896.5859 175.7797 G 117.1824 14993.5859 9428.0000 14276.8584 159 14.2283201217651 127.950872847489 100.8857 97.0000 20.6339 109 175.7797
1009 1 472.4556 5.5750 G 5.2512 560.4556 610.0000 207.6760 90 10.7047443389893 106.728470162969 88.3468 88.0000 12.4856 179 5.5750
1010 1 1028.6000 12.1375 G 10.4106 1115.6000 1228.0000 555.3129 95 10.9980792999268 107.160216791721 87.5696 87.0000 13.4401 164 12.1375
1011 1 96.6076 1.1400 G 1.7623 183.6076 188.0000 31.8065 79 10.0292530059814 104.187905287566 87.3429 87.0000 11.4586 181 1.1400
1012 1 80.8734 0.9543 G 1.5446 171.8734 174.0000 30.7181 79 10.0292530059814 111.271683114431 91.0879 91.0000 13.5145 188 0.9543
1013 1 46.9014 0.5534 G 1.2609 137.9014 139.0000 16.4908 71 9.50789165496826 109.367092896722 91.0000 91.0000 12.2447 186 0.5534
1014 1 14.9677 0.1766 L 0.9565 108.9677 107.0000 22.1133 31 6.2825493812561 113.917725891888 95.0407 94.0000 13.2785 178 0.1766
1015 1 15476.1016 182.6179 G 130.5724 15569.1016 9010.0000 15122.6572 199 15.9177465438843 119.237278103397 95.8619 93.0000 17.4915 187 182.6179
1016 1 62.9118 0.7424 G 1.2439 158.9118 115.0000 90.3752 34 6.57952451705933 127.756360511705 99.2581 96.0000 21.1709 128 0.7424
1017 1 4.1333 0.0488 L 0.8872 91.1333 92.0000 14.3753 30 6.18038702011108 102.718792981768 87.0714 87.0000 10.4792 188 0.0488
1018 1 17.0000 0.2006 L 0.9607 103.0000 96.0000 27.4526 90 10.7047443389893 107.211351049091 87.3860 86.0000 14.1409 236 0.2006
1019 1 8.0000 0.0944 L 0.9033 98.0000 97.0000 12.5075 32 6.38307666778564 108.487159699033 91.2881 90.0000 12.3248 183 0.0944
1020 1 17.5000 0.2065 L 0.9734 118.5000 117.0000 19.9166 62 8.88486671447754 121.742292870021 100.4404 101.0000 13.8282 113 0.2065

Total number of rows: 54359

Table truncated, full table size 6976 Kbytes.




Supplementary file Size Download File type/resource
GSM128572.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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