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Sample GSM128576 Query DataSets for GSM128576
Status Public on Apr 30, 2007
Title 1690_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 17656.6777 335.9532 G 177.8422 17738.6777 8510.0000 18656.4883 154 14.0028171539307 99.7439040252704 82.2083 82.0000 11.8293 124 335.9532
1002 1 805.2121 15.3208 G 9.4145 883.2121 980.0000 458.1851 101 11.3400707244873 93.8143508812592 78.5917 78.0000 10.5429 175 15.3208
1003 1 5.1212 0.0974 L 0.8804 85.1212 90.0000 14.3416 33 6.48204469680786 96.6889090664 80.2857 80.0000 11.1259 188 0.0974
1004 1 15.3846 0.2927 G 1.0075 91.3846 92.0000 13.7908 39 7.04672574996948 90.7053346836375 76.7033 76.0000 9.8036 188 0.2927
1005 1 13.9000 0.2645 L 0.9880 89.9000 91.0000 14.4010 40 7.13649654388428 90.9947721821182 76.6176 76.0000 9.9965 176 0.2645
1006 1 10.5789 0.2013 L 0.9643 87.5789 89.0000 11.6724 38 6.95579624176025 90.8232352999171 76.7059 77.0000 9.2155 176 0.2013
1007 1 3.7879 0.0721 L 0.8691 82.7879 81.0000 15.4758 33 6.48204469680786 95.2541528255151 78.2143 79.0000 10.8361 188 0.0721
1008 1 19367.7441 368.5096 G 186.9826 19451.7441 9763.0000 19474.1074 154 14.0028171539307 104.029690651116 86.5773 84.0000 13.3531 101 368.5096
1009 1 171.2907 3.2591 G 2.7171 249.2907 247.0000 69.6711 86 10.4641580581665 91.7498772179631 78.2051 78.0000 9.1666 121 3.2591
1010 1 912.8842 17.3694 G 10.5894 990.8842 1084.0000 521.7943 95 10.9980792999268 93.5731209904499 77.7346 78.0000 10.3821 168 17.3694
1011 1 38.7973 0.7382 G 1.2650 114.7973 115.0000 16.8330 74 9.70668506622314 90.745481216847 76.8508 76.0000 9.8303 187 0.7382
1012 1 51.4265 0.9785 G 1.3936 129.4265 130.0000 18.7768 68 9.30485343933105 92.873076524651 77.5330 78.0000 9.9154 188 0.9785
1013 1 31.0741 0.5912 G 1.1748 107.0741 106.0000 12.3915 54 8.29185962677002 91.139746217792 76.7198 76.0000 10.0932 188 0.5912
1014 1 342.8804 6.5240 G 4.4277 421.8804 481.0000 165.0550 92 10.8230323791504 95.2815584544257 79.3077 79.0000 10.8544 188 6.5240
1015 1 19686.8398 374.5810 G 198.5723 19766.8398 7193.0000 20833.0684 177 15.0121088027954 99.5448170041999 83.5750 80.0000 13.0299 124 374.5810
1016 1 19.6122 0.3732 G 1.0453 97.6122 96.0000 11.6300 49 7.89865398406982 93.3825159800912 78.9227 78.0000 10.2550 187 0.3732
1017 1 12.3953 0.2358 L 0.9809 90.3953 91.0000 11.4529 43 7.3992772102356 92.158100570541 78.1525 78.0000 9.4387 183 0.2358
1018 1 -0.0556 -0.0011 L 0.8260 78.9444 79.0000 16.7248 54 8.29185962677002 95.5708508854462 79.9364 79.0000 11.0472 114 -0.0011
1019 1 14.1000 0.2683 L 0.9333 95.1000 85.0000 34.9845 90 10.7047443389893 101.893681481777 82.5000 81.0000 13.9291 126 0.2683
1020 1 12.7538 0.2427 L 0.9472 94.7538 86.0000 28.8412 65 9.09728336334229 100.038142857754 81.8462 82.0000 12.0254 108 0.2427

Total number of rows: 54359

Table truncated, full table size 6933 Kbytes.




Supplementary file Size Download File type/resource
GSM128576.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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