NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128588 Query DataSets for GSM128588
Status Public on Apr 30, 2007
Title 2315_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5706.5664 121.7919 G 59.0295 5790.5664 2931.0000 5909.2026 168 14.6254653930664 98.0960770932854 84.1500 84.0000 9.3974 124 121.7919
1002 1 240.7093 5.1373 G 3.3356 324.7093 364.0000 104.7823 86 10.4641580581665 97.3469628998088 84.8933 84.0000 8.8980 184 5.1373
1003 1 16.9792 0.3624 G 1.0230 100.9792 103.0000 9.8351 48 7.81764030456543 98.7080204795855 84.6257 84.0000 9.8053 185 0.3624
1004 1 26.8864 0.5738 G 1.0983 112.8864 112.0000 18.6245 44 7.48482084274292 102.78171852753 86.8876 86.0000 11.1878 184 0.5738
1005 1 23.0192 0.4913 G 1.0855 107.0192 104.0000 14.2039 52 8.1368579864502 98.5938763321955 85.0330 84.0000 9.7292 188 0.4913
1006 1 28.6296 0.6110 G 1.1423 112.6296 113.0000 12.2161 54 8.29185962677002 98.5970074615184 84.9341 84.0000 9.7313 188 0.6110
1007 1 31.7246 0.6771 G 1.1900 116.7246 115.0000 11.5117 69 9.37302112579346 98.0851669258644 85.2486 85.0000 8.7234 187 0.6771
1008 1 5907.1343 126.0725 G 61.1319 5991.1343 3591.0000 6085.9790 166 14.5381488800049 98.0033413267 83.3250 84.0000 9.3356 124 126.0725
1009 1 258.4186 5.5153 G 3.4045 343.4186 381.0000 121.3712 86 10.4641580581665 100.872771491563 84.6857 85.0000 10.5818 181 5.5153
1010 1 152.7595 3.2603 G 2.3685 236.7595 258.0000 72.5585 79 10.0292530059814 99.9600760148168 84.7500 84.0000 10.6401 178 3.2603
1011 1 48.2676 1.0301 G 1.3534 132.2676 132.0000 16.8765 71 9.50789165496826 97.7292096629159 84.8681 84.0000 9.1528 188 1.0301
1012 1 26.0577 0.5561 G 1.1111 111.0577 109.0000 13.7511 52 8.1368579864502 99.9499998658921 84.7418 85.0000 9.9667 188 0.5561
1013 1 27.2064 0.5806 G 1.1248 112.2064 111.0000 13.3359 63 8.95623207092285 99.755163103179 85.2802 85.0000 9.8368 188 0.5806
1014 1 22.1225 0.4721 G 1.0776 107.1225 105.0000 10.4776 49 7.89865398406982 99.4078347610495 85.7582 85.0000 9.6052 188 0.4721
1015 1 5894.1655 125.7957 G 59.3317 5981.1655 2645.0000 6212.6494 171 14.7554721832275 100.808936718795 87.4833 87.0000 9.2060 124 125.7957
1016 1 52.5479 1.1215 G 1.3832 137.5479 141.0000 17.6045 73 9.64087581634521 99.4425405755733 85.1758 85.0000 9.6284 188 1.1215
1017 1 26.8387 0.5728 G 1.1346 109.8387 112.0000 14.7618 62 8.88486671447754 96.8075319157565 83.4670 83.0000 9.2050 188 0.5728
1018 1 16.9194 0.3611 G 1.0414 101.9194 101.0000 10.9357 62 8.88486671447754 97.8703188552389 85.2363 85.0000 8.5802 188 0.3611
1019 1 16.8421 0.3595 L 0.9622 103.8421 102.0000 13.3545 38 6.95579624176025 107.924566228059 87.5000 87.0000 13.9497 186 0.3595
1020 1 23.4386 0.5002 G 1.0901 110.4386 113.0000 11.9341 57 8.51907634735107 101.311623978246 86.7527 87.0000 9.5411 188 0.5002

Total number of rows: 54359

Table truncated, full table size 6931 Kbytes.




Supplementary file Size Download File type/resource
GSM128588.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap