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Sample GSM128598 Query DataSets for GSM128598
Status Public on Apr 30, 2007
Title 2788_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5993.9468 136.6991 G 58.2507 6080.9468 4161.0000 5620.5928 153 13.9572792053223 104.392596137651 88.7667 87.0000 11.5951 124 136.6991
1002 1 188.2235 4.2927 G 2.7513 275.2235 298.0000 76.3899 85 10.4031419754028 100.035737844367 86.5110 87.0000 8.6905 188 4.2927
1003 1 20.3019 0.4630 G 1.0684 105.3019 107.0000 11.8139 53 8.21472454071045 98.5577063875224 85.7692 85.0000 9.0385 188 0.4630
1004 1 23.4545 0.5349 G 1.0911 110.4545 109.0000 10.1513 55 8.36828422546387 101.233391203261 86.5385 87.0000 9.4889 188 0.5349
1005 1 23.9444 0.5461 G 1.1112 107.9444 108.0000 13.7725 54 8.29185962677002 97.1413851544526 85.3370 84.0000 8.7609 187 0.5461
1006 1 30.1228 0.6870 G 1.1552 117.1228 116.0000 13.2375 57 8.51907634735107 101.388603910752 87.1154 87.0000 9.5924 188 0.6870
1007 1 23.3279 0.5320 G 1.0787 110.3279 111.0000 12.1179 61 8.81292343139648 102.281748106981 85.8933 87.0000 10.1878 184 0.5320
1008 1 6352.7192 144.8814 G 63.0908 6438.7192 4634.0000 5842.2109 148 13.7273254394531 102.054783643727 87.9917 86.0000 10.7032 124 144.8814
1009 1 259.4889 5.9180 G 3.4312 346.4889 376.0000 120.1180 90 10.7047443389893 100.982373108422 87.2044 87.0000 9.3216 187 5.9180
1010 1 136.9872 3.1242 G 2.2108 223.9872 236.0000 58.3120 78 9.96557521820068 101.31299489375 87.8167 87.0000 9.5420 186 3.1242
1011 1 967.9813 22.0760 C 2.6486 1107.9813 1101.0000 460.4170 109 11.7806243896484 418.324209531779 230.5177 140.0000 185.5495 87 22.0760
1012 1 1256.7913 28.6626 C 2.8797 1629.7913 1647.0000 367.5969 210 16.3517684936523 565.960113449675 387.3820 373.0000 128.6401 184 28.6626
1013 1 10.1034 0.2304 L 0.7054 112.1034 113.0000 13.7999 29 6.07650756835938 158.931860502455 116.4126 102.0000 37.9546 147 0.2304
1014 1 17.7083 0.4039 G 1.0404 104.7083 104.0000 11.1709 48 7.81764030456543 100.640339792282 86.8736 87.0000 9.0936 188 0.4039
1015 1 6231.7871 142.1234 G 57.8326 6323.7871 4525.0000 5767.6626 157 14.1385507583618 109.346394844857 92.9667 92.0000 11.5643 124 142.1234
1016 1 43.1304 0.9836 G 1.2924 130.1304 131.0000 14.8245 69 9.37302112579346 100.688362489961 86.4176 87.0000 9.1256 188 0.9836
1017 1 15.0690 0.3437 L 0.8107 104.0690 105.0000 10.8879 29 6.07650756835938 128.361949774681 97.1923 89.0000 26.2413 188 0.3437
1018 1 21.6623 0.4940 G 1.0261 110.6623 111.0000 15.5360 77 9.90148735046387 107.842953374888 89.2167 89.0000 12.5620 124 0.4940
1019 1 19.1250 0.4362 G 1.0553 103.1250 103.0000 10.6997 48 7.81764030456543 97.7168659898621 84.9451 84.0000 9.1446 188 0.4362
1020 1 19.6909 0.4491 G 1.0668 104.6909 106.0000 11.0089 55 8.36828422546387 98.1328298697304 84.9945 85.0000 8.7552 188 0.4491

Total number of rows: 54359

Table truncated, full table size 6927 Kbytes.




Supplementary file Size Download File type/resource
GSM128598.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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