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Sample GSM128602 Query DataSets for GSM128602
Status Public on Apr 30, 2007
Title 2900_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) [email protected]
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6262.6816 150.7542 G 65.4879 6345.6816 4142.0000 6185.9756 137 13.2073392868042 96.8985251113427 83.9341 83.0000 9.2657 188 150.7542
1002 1 181.4872 4.3687 G 2.6855 267.4872 290.0000 76.9198 78 9.96557521820068 99.6024469447193 85.0879 86.0000 9.0683 188 4.3687
1003 1 26.1020 0.6283 G 1.1309 109.1020 108.0000 11.3807 49 7.89865398406982 96.4747393920816 82.8022 83.0000 8.9832 188 0.6283
1004 1 32.9038 0.7921 G 1.1885 113.9038 112.0000 14.6986 52 8.1368579864502 95.8348778497243 82.5000 81.0000 9.8899 188 0.7921
1005 1 27.6727 0.6661 G 1.1397 110.6727 107.0000 18.9277 55 8.36828422546387 97.1076024114822 83.2582 83.0000 9.4051 188 0.6661
1006 1 30.5000 0.7342 G 1.1866 110.5000 109.0000 13.3639 64 9.02703380584717 93.1224163294239 81.8771 80.0000 8.7483 185 0.7342
1007 1 29.7465 0.7161 G 1.1496 114.7465 113.0000 12.9253 71 9.50789165496826 99.8134311333582 83.8736 85.0000 9.8756 188 0.7161
1008 1 6302.0962 151.7030 G 63.9344 6388.0962 3577.0000 6212.1650 137 13.2073392868042 99.9164850040644 84.7417 86.0000 9.2777 124 151.7030
1009 1 165.1410 3.9752 G 2.5900 246.1410 260.0000 76.4963 78 9.96557521820068 95.0351204289692 81.6758 81.0000 9.3567 188 3.9752
1010 1 111.8551 2.6926 G 1.9886 196.8551 206.0000 47.7558 69 9.37302112579346 98.989830184974 84.3462 85.0000 9.3266 188 2.6926
1011 1 32.7857 0.7892 G 1.1762 115.7857 115.0000 15.8336 56 8.444016456604 98.4410735061023 82.6374 83.0000 10.2940 188 0.7892
1012 1 34.3208 0.8262 G 1.1970 117.3208 113.0000 16.4372 53 8.21472454071045 98.0147940759559 83.4066 83.0000 10.0099 188 0.8262
1013 1 27.2759 0.6566 G 1.1476 110.2759 110.0000 11.3833 58 8.59348011016846 96.0933005467296 82.2857 83.0000 8.7289 188 0.6566
1014 1 25.8462 0.6222 G 1.1171 109.8462 107.0000 14.4014 52 8.1368579864502 98.3328006498489 83.4451 84.0000 9.5552 188 0.6222
1015 1 6199.5000 149.2333 G 65.5352 6282.5000 3512.0000 6259.9561 144 13.5405502319336 95.8645653432986 83.3136 83.0000 8.5764 122 149.2333
1016 1 36.6719 0.8828 G 1.2404 118.6719 117.0000 14.9646 64 9.02703380584717 95.673792652673 82.0000 82.0000 9.1159 188 0.8828
1017 1 29.0635 0.6996 G 1.1576 112.0635 109.0000 19.7041 63 8.95623207092285 96.8073925080541 83.1484 83.0000 9.2049 188 0.6996
1018 1 24.0417 0.5787 G 1.1001 107.0417 105.0000 14.7195 48 7.81764030456543 97.2979589253834 83.2747 83.0000 9.5320 188 0.5787
1019 1 23.2500 0.5597 G 1.1046 105.2500 103.0000 15.6299 56 8.444016456604 95.2829635353404 82.2692 82.0000 8.8553 188 0.5597
1020 1 21.5472 0.5187 G 1.0463 104.5472 104.0000 9.8413 53 8.21472454071045 99.920047122787 84.5000 83.0000 11.2800 188 0.5187

Total number of rows: 54359

Table truncated, full table size 6913 Kbytes.




Supplementary file Size Download File type/resource
GSM128602.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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