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| Status |
Public on Jan 18, 2008 |
| Title |
NICD Injected 2 |
| Sample type |
RNA |
| |
|
| Source name |
Animal pole explant
|
| Organism |
Xenopus laevis |
| Characteristics |
Wild type, NICD RNA Injected Stage 20 explant
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Animal pole tissue explants were isolated embryonic stage 8 and cultured until sibling embryos reached stage 20.
|
| Label |
biotin
|
| Label protocol |
1 µg of total RNA was processed using MessageAmp™ aRNA Amplification Kit (AMBION) to produce biotinylated cRNA targets.
|
| |
|
| Hybridization protocol |
standard Affymetrix procedures
|
| Scan protocol |
standard Affymetrix procedures
|
| Description |
St 20, NICD injected animal pole tissue explant
|
| Data processing |
Affymetrix Microarray Suite version 5.0
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| |
|
| Submission date |
Aug 18, 2006 |
| Last update date |
Aug 09, 2007 |
| Contact name |
Curtis R Altmann |
| E-mail(s) |
[email protected]
|
| Phone |
8506442925
|
| Organization name |
Goodwin Procter LLP
|
| Street address |
599 Lexington Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10022 |
| Country |
USA |
| |
|
| Platform ID |
GPL1318 |
| Series (1) |
| GSE5564 |
Notch Signaling in Glial Development |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
MAS5-calculated Signal intensity |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
145.2 |
P |
0.010317 |
| AFFX-BioB-M_at |
218.6 |
P |
0.000195 |
| AFFX-BioB-3_at |
159.8 |
P |
0.001248 |
| AFFX-BioC-5_at |
408.3 |
P |
0.000147 |
| AFFX-BioC-3_at |
246.4 |
P |
0.000147 |
| AFFX-BioDn-5_at |
263.1 |
P |
0.00007 |
| AFFX-BioDn-3_at |
1762.6 |
P |
0.00011 |
| AFFX-CreX-5_at |
4496.7 |
P |
0.000044 |
| AFFX-CreX-3_at |
9438.1 |
P |
0.000044 |
| AFFX-DapX-5_at |
23.2 |
A |
0.287743 |
| AFFX-DapX-M_at |
26.2 |
A |
0.41138 |
| AFFX-DapX-3_at |
6.3 |
A |
0.932322 |
| AFFX-LysX-5_at |
20.1 |
A |
0.574038 |
| AFFX-LysX-M_at |
7.3 |
A |
0.631562 |
| AFFX-LysX-3_at |
16.6 |
A |
0.51489 |
| AFFX-PheX-5_at |
3.1 |
A |
0.843268 |
| AFFX-PheX-M_at |
3.9 |
A |
0.860518 |
| AFFX-PheX-3_at |
30.4 |
A |
0.51489 |
| AFFX-ThrX-5_at |
12 |
A |
0.617401 |
| AFFX-ThrX-M_at |
3.6 |
A |
0.897835 |
Total number of rows: 15611
Table truncated, full table size 504 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM129270.EXP.gz |
481 b |
(ftp)(http) |
EXP |
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