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Sample GSM1296610 Query DataSets for GSM1296610
Status Public on Dec 24, 2013
Title PP58_after
Sample type RNA
 
Source name muscle biopsy
Organism Homo sapiens
Characteristics ethnicity: Caucasian
gender: male
age: 62 years
Treatment protocol All subjects performed a exercise training consisting of 2 endurance exercise session and 1 resistance exercise session per week. Endurance training consisted of cycling, resistance training of exercises training all major muscle groups, intensities were adapted throughout the training.
Growth protocol 18 healthy middle-aged men (age 59±4 years, body weight 95±11 kg, body mass index 30 ± 4) participated in the study. The study was approved by the medical ethical committee of Maastricht University and all subjects received oral and written information about the experimental procedures and provided written informed consent.
Extracted molecule total RNA
Extraction protocol Percutaneous needle biopsies were taken before and 3 days after the last exercise training bout from the vastus lateralis muscle, using the Bergström technique with suction. After each biopsy, the collected tissue sample was carefully cleared from visible adipose tissue and directly frozen into liquid nitrogen.
Label biotin
Label protocol One hundred nanogram of total RNA was labelled using Ambion WT expression kit (Applied Biosystems, Nieuwekerk a/d IJssel, The Netherlands).
 
Hybridization protocol Hybridization and washing of Affymetrix GeneChip Human Gene 1.1 ST arrays was carried out according to standard Affymetrix protocols (Affymetrix, Santa Clara, CA).
Scan protocol Arrays were scanned on an Affymetrix 3000 7G scanner according to standard protocol.
Data processing Expression estimates were calculated using RMA
 
Submission date Dec 23, 2013
Last update date Dec 24, 2013
Contact name Milene Catoire
E-mail(s) [email protected]
Organization name Wageningen University
Department Human Nutrition
Street address Bomenweg 2
City Wageningen
ZIP/Postal code 6703HD
Country Netherlands
 
Platform ID GPL11532
Series (1)
GSE53598 Effects of mixed exercise training on gene expression in human skeletal muscle

Data table header descriptions
ID_REF
VALUE RMA signal (as log2)

Data table
ID_REF VALUE
7892501 2.802782749
7892502 10.42471236
7892503 8.572714552
7892504 116.1400081
7892505 4.714692455
7892506 8.015467631
7892507 9.151046295
7892508 44.65486003
7892509 513.8652627
7892510 12.16977684
7892511 4.729295821
7892512 15.30806441
7892513 7.320324416
7892514 196.8916832
7892515 112.3823666
7892516 2.794904063
7892517 26.92015174
7892518 3.717065548
7892519 5.569074833
7892520 144.1721206

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1296610_G094_D7_PP58_AFTER_TRAINING_HUGENE-1_1-ST-V1_D07_3.CEL.gz 4.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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