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Sample GSM1310938 Query DataSets for GSM1310938
Status Public on Dec 31, 2022
Title PCOS Patient 2
Sample type RNA
 
Source name PCOS Patient
Organism Homo sapiens
Characteristics gender: Female
diagnosis: Polycystic Ovarian Syndrome (PCOS)
tissue: Peripheral Blood
Treatment protocol Total RNA with small RNAs was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Extracted molecule total RNA
Extraction protocol No specific treatment was performed as the study group included blood samples collected from control and PCOS subjects.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description P2
Data processing The data were normalised using quantile normalisation with GeneSpring GX v 10.0.2
 
Submission date Jan 21, 2014
Last update date Dec 31, 2022
Contact name Malini Laloraya
E-mail(s) [email protected]
Phone +91-471-2529462
Organization name Rajiv Gandhi Centre for Biotechnology,
Department Department of Molecular Reproduction,
Lab Female Reproduction and Metabolic Syndromes Laboratory,
Street address Thycaud PO, Poojappura
City Thiruvananthapuram
State/province Kerala
ZIP/Postal code 695 014
Country India
 
Platform ID GPL10558
Series (2)
GSE54248 Microarray mRNA expression profiling of peripheral blood samples in PCOS patients
GSE54250 mRNA/miRNA profiling of peripheral blood samples in PCOS patients

Data table header descriptions
ID_REF
VALUE Average Signal (Normalized)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 31.8 0.13117
ILMN_2055271 56.9 0.90779
ILMN_1736007 38.3 0.47273
ILMN_2383229 39.1 0.51558
ILMN_1806310 37.8 0.44545
ILMN_1779670 57.1 0.91039
ILMN_1653355 52.2 0.85065
ILMN_1717783 32.9 0.1961
ILMN_1705025 58.9 0.92987
ILMN_1814316 37.4 0.42857
ILMN_2359168 37.1 0.41429
ILMN_1731507 36.5 0.38831
ILMN_1787689 51.9 0.84545
ILMN_3241953 217.7 1
ILMN_1745607 31.1 0.1026
ILMN_2136495 31.7 0.13117
ILMN_1668111 24.5 0.00519
ILMN_2295559 33.8 0.24545
ILMN_1735045 28.5 0.03117
ILMN_1680754 64.2 0.97013

Total number of rows: 47323

Table truncated, full table size 1116 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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