NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1310939 Query DataSets for GSM1310939
Status Public on Dec 31, 2022
Title PCOS Patient 3
Sample type RNA
 
Source name PCOS Patient
Organism Homo sapiens
Characteristics gender: Female
diagnosis: Polycystic Ovarian Syndrome (PCOS)
tissue: Peripheral Blood
Treatment protocol Total RNA with small RNAs was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Extracted molecule total RNA
Extraction protocol No specific treatment was performed as the study group included blood samples collected from control and PCOS subjects.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description P3
Data processing The data were normalised using quantile normalisation with GeneSpring GX v 10.0.2
 
Submission date Jan 21, 2014
Last update date Dec 31, 2022
Contact name Malini Laloraya
E-mail(s) [email protected]
Phone +91-471-2529462
Organization name Rajiv Gandhi Centre for Biotechnology,
Department Department of Molecular Reproduction,
Lab Female Reproduction and Metabolic Syndromes Laboratory,
Street address Thycaud PO, Poojappura
City Thiruvananthapuram
State/province Kerala
ZIP/Postal code 695 014
Country India
 
Platform ID GPL10558
Series (2)
GSE54248 Microarray mRNA expression profiling of peripheral blood samples in PCOS patients
GSE54250 mRNA/miRNA profiling of peripheral blood samples in PCOS patients

Data table header descriptions
ID_REF
VALUE Average Signal (Normalized)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 27.8 0.17403
ILMN_2055271 60.1 0.98052
ILMN_1736007 34.9 0.64286
ILMN_2383229 39.2 0.78052
ILMN_1806310 34.7 0.62468
ILMN_1779670 44.5 0.87403
ILMN_1653355 50 0.93117
ILMN_1717783 22.4 0.01169
ILMN_1705025 30.3 0.34026
ILMN_1814316 31.6 0.43117
ILMN_2359168 31.2 0.40519
ILMN_1731507 28.9 0.24286
ILMN_1787689 35 0.64675
ILMN_3241953 199 1
ILMN_1745607 35 0.64416
ILMN_2136495 26.5 0.1039
ILMN_1668111 28.5 0.22597
ILMN_2295559 34.7 0.62338
ILMN_1735045 24.5 0.04545
ILMN_1680754 58.4 0.97403

Total number of rows: 47323

Table truncated, full table size 1141 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap