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Sample GSM1310940 Query DataSets for GSM1310940
Status Public on Dec 31, 2022
Title PCOS Patient 4
Sample type RNA
 
Source name PCOS Patient
Organism Homo sapiens
Characteristics gender: Female
diagnosis: Polycystic Ovarian Syndrome (PCOS)
tissue: Peripheral Blood
Treatment protocol Total RNA with small RNAs was extracted with QIAGEN miRNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Extracted molecule total RNA
Extraction protocol No specific treatment was performed as the study group included blood samples collected from control and PCOS subjects.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description P4
Data processing The data were normalised using quantile normalisation with GeneSpring GX v 10.0.2
 
Submission date Jan 21, 2014
Last update date Dec 31, 2022
Contact name Malini Laloraya
E-mail(s) [email protected]
Phone +91-471-2529462
Organization name Rajiv Gandhi Centre for Biotechnology,
Department Department of Molecular Reproduction,
Lab Female Reproduction and Metabolic Syndromes Laboratory,
Street address Thycaud PO, Poojappura
City Thiruvananthapuram
State/province Kerala
ZIP/Postal code 695 014
Country India
 
Platform ID GPL10558
Series (2)
GSE54248 Microarray mRNA expression profiling of peripheral blood samples in PCOS patients
GSE54250 mRNA/miRNA profiling of peripheral blood samples in PCOS patients

Data table header descriptions
ID_REF
VALUE Average Signal (Normalized)
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 38.5 0.68961
ILMN_2055271 47.8 0.8987
ILMN_1736007 35.8 0.58312
ILMN_2383229 29.4 0.19221
ILMN_1806310 39.9 0.73636
ILMN_1779670 48.6 0.90649
ILMN_1653355 43.4 0.81818
ILMN_1717783 21.7 0.0013
ILMN_1705025 32 0.34675
ILMN_1814316 34.5 0.50909
ILMN_2359168 31.4 0.30519
ILMN_1731507 25.2 0.03117
ILMN_1787689 45.2 0.85065
ILMN_3241953 191.6 1
ILMN_1745607 23.5 0.01558
ILMN_2136495 29.7 0.20649
ILMN_1668111 27.6 0.11039
ILMN_2295559 31.7 0.32208
ILMN_1735045 32.2 0.35844
ILMN_1680754 52.2 0.95455

Total number of rows: 47323

Table truncated, full table size 1119 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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