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Sample GSM131282 Query DataSets for GSM131282
Status Public on Jan 08, 2007
Title AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Roots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Cold stress (4°C), Group Kudla. The Magenta boxes were placed on ice in the cold room (4°C). The environmental light intensity was 20 µEinstein/cm2 sec. An extra light which was installed over the plants had 40 µEinstein/cm2 sec. The plants stayed there.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5621 AtGenExpress: Stress Treatments (Cold stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.46779467773438E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.12183496093750E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.36605163574219E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 4.91059326171875E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.50602294921875E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.35118560791016E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 8.91607437133789E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 5.30874328613281E+001 P 7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at 8.02006683349609E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 2.47721815109253E+000 A 5.67627012729645E-001
AFFX-r2-Bs-thr-5_s_at 4.69677805900574E-001 A 7.80517995357513E-001
AFFX-r2-Bs-thr-3_s_at 2.19662094116211E+000 A 7.80517995357513E-001
AFFX-r2-Bs-phe-M_at 7.72721827030182E-001 A 5.67627012729645E-001
AFFX-r2-Bs-phe-5_at 1.14245986938477E+000 A 6.96289002895355E-001
AFFX-r2-Bs-phe-3_at 2.94092297554016E+000 A 6.65526986122131E-001
AFFX-r2-Bs-lys-M_at 5.78678607940674E-001 A 8.05419981479645E-001
AFFX-r2-Bs-lys-5_at 3.17045974731445E+000 A 6.33789002895355E-001
AFFX-r2-Bs-lys-3_at 6.81776332855225E+000 A 1.44775390625000E-001
AFFX-r2-Bs-dap-M_at 3.98752522468567E+000 A 1.71387001872063E-001
AFFX-r2-Bs-dap-5_at 5.46871066093445E-001 A 9.04784977436066E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131282.CEL.gz 2.2 Mb (ftp)(http) CEL

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