NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM131337 Query DataSets for GSM131337
Status Public on Jan 08, 2007
Title AtGen_6-4121_Droughtstress-Roots-0.5h_Rep1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Roots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Drought stress, Group Kudla. The plants were stressed by 15 min. dry air stream (clean bench) until 10% loss of fresh weight; then incubation in closed vessels in the climate chamber.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5624 AtGenExpress: Stress Treatments (Drought stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.17025952148438E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.44110107421875E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 2.97908508300781E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 4.80937469482422E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.23754425048828E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.35024307250977E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 9.93943023681641E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 6.58321075439453E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 4.62399291992188E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 8.66997420787811E-001 A 8.70360970497131E-001
AFFX-r2-Bs-thr-5_s_at 2.98215579986572E+000 A 3.34473013877869E-001
AFFX-r2-Bs-thr-3_s_at 2.57098841667175E+000 A 4.66064006090164E-001
AFFX-r2-Bs-phe-M_at 3.26365679502487E-001 A 6.01073980331421E-001
AFFX-r2-Bs-phe-5_at 2.06989243626595E-001 A 6.65526986122131E-001
AFFX-r2-Bs-phe-3_at 6.81484460830688E-001 A 6.65526986122131E-001
AFFX-r2-Bs-lys-M_at 2.47965574264526E-001 A 7.25830018520355E-001
AFFX-r2-Bs-lys-5_at 1.60559487342834E+000 A 6.65526986122131E-001
AFFX-r2-Bs-lys-3_at 3.55359745025635E+000 P 3.02734002470970E-002
AFFX-r2-Bs-dap-M_at 9.14597138762474E-002 A 8.05419981479645E-001
AFFX-r2-Bs-dap-5_at 1.74450445175171E+000 A 6.01073980331421E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131337.CEL.gz 2.3 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap