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Sample GSM131338 Query DataSets for GSM131338
Status Public on Jan 08, 2007
Title AtGen_6-4122_Droughtstress-Roots-0.5h_Rep2
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Roots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Drought stress, Group Kudla. The plants were stressed by 15 min. dry air stream (clean bench) until 10% loss of fresh weight; then incubation in closed vessels in the climate chamber.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5624 AtGenExpress: Stress Treatments (Drought stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.00749951171875E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.08699072265625E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 2.27788894653320E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 3.74683410644531E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.08676933288574E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.17789337158203E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 7.36103744506836E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 6.42006607055664E+001 P 7.32421991415322E-004
AFFX-r2-Ec-bioB-3_at 4.09002532958984E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 1.30861711502075E+000 A 7.80517995357513E-001
AFFX-r2-Bs-thr-5_s_at 3.51704931259155E+000 A 2.74170011281967E-001
AFFX-r2-Bs-thr-3_s_at 1.75357580184937E+000 A 7.25830018520355E-001
AFFX-r2-Bs-phe-M_at 3.19201898574829E+000 A 5.00000000000000E-001
AFFX-r2-Bs-phe-5_at 2.28557252883911E+000 A 5.33936023712158E-001
AFFX-r2-Bs-phe-3_at 6.07903909683228E+000 A 5.33936023712158E-001
AFFX-r2-Bs-lys-M_at 8.54542016983032E-001 A 5.33936023712158E-001
AFFX-r2-Bs-lys-5_at 7.76805579662323E-001 A 7.80517995357513E-001
AFFX-r2-Bs-lys-3_at 4.85229539871216E+000 A 1.49657994508743E-001
AFFX-r2-Bs-dap-M_at 2.53908562660217E+000 A 4.32372987270355E-001
AFFX-r2-Bs-dap-5_at 4.67387437820435E-001 A 9.04784977436066E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131338.CEL.gz 2.2 Mb (ftp)(http) CEL

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