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Sample GSM131353 Query DataSets for GSM131353
Status Public on Jan 08, 2007
Title AtGen_6-4521_Droughtstress-Roots-12.0h_Rep1
Sample type RNA
 
Source name Col-0
Organism Arabidopsis thaliana
Characteristics Stock Code: N1092
Tissue: Roots
Treatment protocol At day 16, stress treatment started at 3 hours of light treatment.
Drought stress, Group Kudla. The plants were stressed by 15 min. dry air stream (clean bench) until 10% loss of fresh weight; then incubation in closed vessels in the climate chamber.
Extracted molecule total RNA
Label biotin
 
Description location: Growth Room
Atmosphere: Normal
Humidity: 50%
Temperature: 24
Lighting: 16 hour days
Medium: Murashige and Skoog
Water: N/A
Data processing The data were analysed using Affymetrix Microarray Suite 5.0 (MAS5)
 
Submission date Aug 25, 2006
Last update date Aug 28, 2018
Contact name Nottingham Arabidopsis Stock Centre (NASC)
E-mail(s) [email protected]
Phone +44 (0)115 951 3237
Fax +44 (0)115 951 3297
URL http://arabidopsis.info/
Organization name Nottingham Arabidopsis Stock Centre (NASC)
Department School of Biosciences, University of Nottingham
Street address Sutton Bonington Campus
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platform ID GPL198
Series (1)
GSE5624 AtGenExpress: Stress Treatments (Drought stress)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-r2-P1-cre-5_at 2.41017626953125E+003 P 2.44141003349796E-004
AFFX-r2-P1-cre-3_at 2.36582788085938E+003 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-5_at 3.35312561035156E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioD-3_at 4.84476470947266E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-5_at 1.65177093505859E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioC-3_at 1.28499389648438E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-M_at 1.12797714233398E+002 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-5_at 5.80665283203125E+001 P 2.44141003349796E-004
AFFX-r2-Ec-bioB-3_at 4.97142677307129E+001 P 2.44141003349796E-004
AFFX-r2-Bs-thr-M_s_at 4.98566299676895E-001 A 9.19434010982513E-001
AFFX-r2-Bs-thr-5_s_at 8.72077345848083E-001 A 5.00000000000000E-001
AFFX-r2-Bs-thr-3_s_at 4.46092700958252E+000 A 5.33936023712158E-001
AFFX-r2-Bs-phe-M_at 2.57537305355072E-001 A 8.28612983226776E-001
AFFX-r2-Bs-phe-5_at 2.32567220926285E-001 A 9.32372987270355E-001
AFFX-r2-Bs-phe-3_at 5.76837635040283E+000 A 3.03710997104645E-001
AFFX-r2-Bs-lys-M_at 3.62186372280121E-001 A 9.04784977436066E-001
AFFX-r2-Bs-lys-5_at 2.70648097991943E+000 A 3.66210997104645E-001
AFFX-r2-Bs-lys-3_at 4.86709928512573E+000 A 1.29638999700546E-001
AFFX-r2-Bs-dap-M_at 8.01363945007324E-001 A 7.80517995357513E-001
AFFX-r2-Bs-dap-5_at 9.08079028129578E-001 A 6.96289002895355E-001

Total number of rows: 22810

Table truncated, full table size 1250 Kbytes.




Supplementary file Size Download File type/resource
GSM131353.CEL.gz 2.2 Mb (ftp)(http) CEL

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