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Sample GSM1316693 Query DataSets for GSM1316693
Status Public on Jan 29, 2014
Title KG1a_Untreated
Sample type RNA
 
Source name KG1a, untreated
Organism Homo sapiens
Characteristics tissue of origin: AML-blast
gender: Male
age: 59 years
source: ATCC
cell line: KG1a
treatment: untreated
Treatment protocol Cells were left untreated or treated with PMA (phorbol 12-myristate 13-acetate) at 10 ng/ml for 2 hours
Growth protocol Cells were maintained in complete media (Isocove's Modified Dulbecco's Media + 100 U/ml penicillin/streptomycin + 100 mM L-Glutamine + 20% fetal calf serum)
Extracted molecule total RNA
Extraction protocol Material was isolated using RNeasy mini-columns (Qiagen)
Label Biotin
Label protocol Carried out by Expression Analysis (Durham, NC, USA) following standard Affymetrix protocols.
 
Hybridization protocol Carried out by Expression Analysis (Durham, NC, USA) following standard Affymetrix protocols.
Scan protocol Carried out by Expression Analysis (Durham, NC, USA) following standard Affymetrix protocols.
Description Gene expression data from unstimulated KG1a
Data processing The data were analyzed with Affymetrix GeneChip Operating Software (GCOS1.x) by Expression Analysis
 
Submission date Jan 28, 2014
Last update date Jan 29, 2014
Contact name Gregory B Lesinski
Organization name Winship Cancer Institute of Emory University
Department Hematology and Medical Oncology
Lab Lesinski Lab
Street address 1365C Clifton Rd. NE
City Atlanta
State/province GA
ZIP/Postal code 30324
Country USA
 
Platform ID GPL570
Series (1)
GSE54484 Identification of protein kinase C beta 2 regulated genes early in dendritic cell differentiation

Data table header descriptions
ID_REF
VALUE GCOS 1.X signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 46.4 A 0.4181
1053_at 1722.2 P 0.0003
117_at 129.2 A 0.0813
121_at 1297.9 P 0.0031
1255_g_at 7.3 A 0.8103
1294_at 531.8 P 0.0042
1316_at 85.4 P 0.0247
1320_at 5.7 A 0.9753
1405_i_at 59.2 A 0.1360
1431_at 59.0 A 0.0738
1438_at 68.4 A 0.4384
1487_at 1072.3 P 0.0131
1494_f_at 186.2 M 0.0545
1552256_a_at 1837.3 P 0.0239
1552257_a_at 3287.5 P 0.0002
1552258_at 178.3 A 0.1714
1552261_at 9.0 A 0.4324
1552263_at 901.8 P 0.0002
1552264_a_at 1362.7 P 0.0002
1552266_at 55.8 A 0.2461

Total number of rows: 54675

Table truncated, full table size 1351 Kbytes.




Supplementary file Size Download File type/resource
GSM1316693_EA04004_25570_H133+_KG1aU_S2.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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