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Sample GSM133511 Query DataSets for GSM133511
Status Public on Sep 02, 2006
Title Scc1 distribution in scc2-4 cells on chromosome VI (in G2/Nocodazole)
Sample type genomic
 
Source name Chromatin Immunoprecipitated DNA
Organism Saccharomyces cerevisiae
Characteristics Strain genotype: scc2-4 SCC1-Pk9 GAL-SCC1-HA3
Extracted molecule genomic DNA
Label biotin-11-ddATP
 
Hybridization protocol Hybridization, blocking and washing were carried out as previously described (Katou et al., 2003, Nature) (Lengronne et al., 2004, Nature). Samples were hybridized for 16 hours at 42ºC in a hybridization oven (GeneChip Hybridization Oven 640, Affymetrix).
Scan protocol Washing and scanning protocol provided by Affymetrix was performed automatically on a fluidics station (GeneChip fluidics station 450, Affymetrix).
Description Distribution of Scc1-HA3 (expressed in HU from the Gal promoter in cells at 37°C)on chromosome VI in scc2-4 cells arrested in nocodazole at 37°C.)
Data processing Data were processed following the protocol provided by Affymetrix (GCOS ver 1.4)
 
Submission date Sep 01, 2006
Last update date Sep 01, 2006
Contact name Armelle Lengronne
E-mail(s) [email protected]
Phone +33 499 61 9955
Organization name CNRS
Department Institut de Genetique Humaine
Lab Equipe Pasero
Street address 141 rue de la Cardonille
City Montpellier
ZIP/Postal code 34396
Country France
 
Platform ID GPL347
Series (1)
GSE5719 Cohesin and cohesion establishment factors distribution on S.Cerevisiae chromosome VI during the cell cycle

Data table header descriptions
ID_REF
Signal Intensity Raw Signal Intensity
Detection p-value
VALUE Normalized Signal Intensity against SUP fraction
Signal Log Ratio
Change p-value

Data table
ID_REF Signal Intensity Detection p-value VALUE Signal Log Ratio Change p-value
c6-1_s_at 1973.6 0.000219 2108.1 0.2 0.000021
c6-3_s_at 709.5 0.000219 757.9 0.3 0.000001
c6-5_at 536.7 0.125 573.2 0.1 0.5
c6-7_s_at 1034.4 0.000219 1104.9 0.1 0.5
c6-9_s_at 1676.4 0.000219 1790.6 0.2 0.006111
c6-11_s_at 721.7 0.000327 770.9 0.2 0.019362
c6-13_s_at 365.1 0.000219 389.9 0.2 0.00971
c6-15_at 190.8 0.0625 203.8 0.2 0.0625
c6-17_at 74.4 0.000219 79.5 0.1 0.5
c6-18_at 6.4 0.013092 6.8 0.2 0.115705
c6-19_s_at 133.3 0.000219 142.4 0.4 0.00001
c6-20_at 177.7 0.000219 189.8 0.2 0.039399
c6-21_at 365.3 0.000266 390.2 0.3 0.001474
c6-23_at 85.9 0.000219 91.7 0.2 0.5
c6-25_s_at 433.8 0.000219 463.4 0 0.5
c6-26_at 29.3 0.03125 31.3 0.7 0.111328
c6-28_at 38 0.000893 40.6 -0.3 0.975251
c6-30_s_at 106 0.000266 113.2 -0.2 0.5
c6-32_s_at 186.2 0.000219 198.9 -0.1 0.5
c6-34_s_at 450.5 0.000219 481.2 0 0.5

Total number of rows: 882

Table truncated, full table size 35 Kbytes.




Supplementary data files not provided

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