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Sample GSM133520 Query DataSets for GSM133520
Status Public on Sep 02, 2006
Title Scc1-HA6 distribution on chromosome VI in eco1-1 cells at 37°C (2nd time point)
Sample type genomic
 
Source name Chromatin Immunoprecipitated DNA
Organism Saccharomyces cerevisiae
Characteristics strain genotype: eco1-1 Scc1-HA6
Extracted molecule genomic DNA
Label biotin-11-ddATP
 
Hybridization protocol Hybridization, blocking and washing were carried out as previously described (Katou et al., 2003, Nature) (Lengronne et al., 2004, Nature). Samples were hybridized for 16 hours at 42ºC in a hybridization oven (GeneChip Hybridization Oven 640, Affymetrix).
Scan protocol Washing and scanning protocol provided by Affymetrix was performed automatically on a fluidics station (GeneChip fluidics station 450, Affymetrix).
Description Scc1-HA6 distribution at 35 min post- HU release on chromosome VI in eco1-1 cells at 37°C
Data processing Data were processed following the protocol provided by Affymetrix (GCOS ver 1.4)
 
Submission date Sep 01, 2006
Last update date Sep 01, 2006
Contact name Armelle Lengronne
E-mail(s) [email protected]
Phone +33 499 61 9955
Organization name CNRS
Department Institut de Genetique Humaine
Lab Equipe Pasero
Street address 141 rue de la Cardonille
City Montpellier
ZIP/Postal code 34396
Country France
 
Platform ID GPL347
Series (1)
GSE5719 Cohesin and cohesion establishment factors distribution on S.Cerevisiae chromosome VI during the cell cycle

Data table header descriptions
ID_REF
Signal Intensity Raw Signal Intensity
Detection p-value
VALUE Normalized Signal Intensity against SUP fraction
Signal Log Ratio
Change p-value

Data table
ID_REF Signal Intensity Detection p-value VALUE Signal Log Ratio Change p-value
c6-1_s_at 2524.1 0.000219 1936.7 0 0.5
c6-3_s_at 1060.7 0.000219 813.9 0 0.5
c6-5_at 612.2 0.125 469.7 0 0.5
c6-7_s_at 1169.7 0.000219 897.5 -0.2 0.981883
c6-9_s_at 1946.1 0.000219 1493.3 -0.3 0.999988
c6-11_s_at 988.5 0.000327 758.5 -0.3 0.999018
c6-13_s_at 460.6 0.000219 353.4 -0.3 0.997888
c6-15_at 366.7 0.0625 281.3 0.8 0.007813
c6-17_at 176.1 0.000219 135.1 0 0.5
c6-18_at 17.2 0.000805 13.2 0.1 0.083222
c6-19_s_at 213.2 0.000219 163.6 0.1 0.5
c6-20_at 271.7 0.000219 208.5 0.5 0.000008
c6-21_at 491.7 0.000219 377.3 0.3 0.044415
c6-23_at 84.6 0.000219 64.9 -0.6 0.999991
c6-25_s_at 605.6 0.000219 464.7 -0.4 0.999966
c6-26_at 36.6 0.03125 28.1 0.2 0.046875
c6-28_at 69.7 0.000893 53.5 -0.4 0.995635
c6-30_s_at 189.8 0.000219 145.6 -0.3 0.994204
c6-32_s_at 256.3 0.000219 196.7 -0.5 1
c6-34_s_at 437.3 0.000219 335.5 -0.7 1

Total number of rows: 882

Table truncated, full table size 34 Kbytes.




Supplementary data files not provided

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