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Sample GSM1339618 Query DataSets for GSM1339618
Status Public on Mar 05, 2014
Title Rheumatoid arthritis, synovial membrane patient K36 (U133A)
Sample type RNA
 
Source name synovial membrane patient K36 (rheumatoid arthritis)
Organism Homo sapiens
Characteristics gender: male
age: 52
clinical status: rheumatoid arthritis
Treatment protocol NSAID, Gold
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
K36
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 643.1 P 0.001354
1053_at 107.3 M 0.05447
117_at 282.6 P 0.000266
121_at 1251 P 0.003067
1255_g_at 69.5 A 0.189687
1294_at 523.5 P 0.000673
1316_at 146 P 0.006532
1320_at 67.9 A 0.438361
1405_i_at 566.6 P 0.001165
1431_at 29.2 A 0.32083
1438_at 198.5 A 0.089405
1487_at 612.1 P 0.021866
1494_f_at 229.3 A 0.07383
1598_g_at 3078.3 P 0.000219
160020_at 1489.2 P 0.002228
1729_at 504.5 P 0.004863
177_at 162.8 P 0.006532
1773_at 151.5 M 0.05447
179_at 503.7 A 0.107301
1861_at 209.5 P 0.009985

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339618_SynM-K36.CEL.gz 2.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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