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Sample GSM1339632 Query DataSets for GSM1339632
Status Public on Mar 05, 2014
Title Osteoarthritis, synovial membrane patient R61 (U133A)
Sample type RNA
 
Source name synovial membrane patient R61 (osteoarthritis)
Organism Homo sapiens
Characteristics gender: female
age: 59
clinical status: osteoarthritis
Treatment protocol None
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier instructions, Affymetrix
 
Hybridization protocol according to supplier instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
R61
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
MAS5.0 signal intensity, ABS_CALL: presence/absence call, DETECTION P-VALUE: significance of 0-hypothesis (not expressed)
 
Submission date Mar 05, 2014
Last update date Mar 05, 2014
Contact name Peter Stiehl
E-mail(s) [email protected]
Organization name University of Leipzig
Department Institute of Pathology
Street address Liebigstr. 24
City Leipzig
ZIP/Postal code 04103
Country Germany
 
Platform ID GPL96
Series (1)
GSE55584 Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation [Leipzig]

Data table header descriptions
ID_REF
VALUE MAS5.0 signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
1007_s_at 642.4 P 0.004863
1053_at 141.1 P 0.001354
117_at 170.3 P 0.017001
121_at 1057.4 P 0.009985
1255_g_at 78 A 0.150527
1294_at 443.1 P 0.002228
1316_at 124.3 P 0.005643
1320_at 196.4 P 0.043968
1405_i_at 70 A 0.078906
1431_at 51.3 P 0.048995
1438_at 187.1 A 0.107301
1487_at 510.1 P 0.035163
1494_f_at 285.5 P 0.019304
1598_g_at 6518.1 P 0.000219
160020_at 1009.9 P 0.009985
1729_at 525.9 P 0.00418
177_at 409.8 P 0.000673
1773_at 167.2 M 0.05447
179_at 762.4 A 0.098054
1861_at 259.2 P 0.004863

Total number of rows: 22283

Table truncated, full table size 594 Kbytes.




Supplementary file Size Download File type/resource
GSM1339632_SynM-R61.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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